Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_B06
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 70 3e-13
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 57 2e-09
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 52 7e-08
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 47 2e-06
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 47 3e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.3
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.3
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 5.4
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 5.4
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 26 5.4
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 7.2
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 7.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 9.5
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 69.7 bits (163), Expect = 3e-13
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 318 FGTSSPFDQDVERATSENNT--SEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPH 491
+ ++S F D+E+ATSE SEE L +EI D+ + S K +R + R+ H +P+
Sbjct: 5 WNSNSQFASDIEKATSETLPAGSEEISLYLEISDQIRSKSVDPKFAMRILKSRIDHSNPN 64
Query: 492 VQVHAATLLDACVANCGRXFHLEVASRDF 578
VQ+ A L D CV N G F LE+ASR+F
Sbjct: 65 VQIMALKLTDTCVKNGGSGFLLEIASREF 93
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +3
Query: 321 GTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTS-AKECLRAVMRRLAHPDPHVQ 497
G + + + +AT E NT E+W +IM+ CD+ ++S + ++ + +RL + ++Q
Sbjct: 4 GKPNSIETLILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQ 63
Query: 498 VHAATLLDACVANCGRXFHLEVASRDFETEFRRLLS 605
+ A TL DA V NC E++SR F ++ S
Sbjct: 64 LLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIAS 99
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 52.0 bits (119), Expect = 7e-08
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 324 TSSPFDQDVERATSENNTSEEWGLIMEICDRAGASS-TSAKECLRAVMRRLAHPDPHVQV 500
+S + +++AT + N L +EI D + +E +++R+ +P V
Sbjct: 3 SSQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSY 62
Query: 501 HAATLLDACVANCGRXFHLEVASRDFETEF 590
A LLD CV NCG FH ++AS +F F
Sbjct: 63 LALHLLDICVKNCGYPFHFQIASEEFLNGF 92
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +3
Query: 348 VERATSENNTSEEWGLIMEICDRAGASSTSA-KECLRAVMRRLAHPDPHVQVHAATLLDA 524
++ AT + + ++I D + + +E A++R++ +P V A LLD
Sbjct: 12 IQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVNDRNPTVAYLALNLLDI 71
Query: 525 CVANCGRXFHLEVASRDFETEFRRLLSRAQPPVAARLRXLL 647
CV NCG F L++AS++F E R P +++ ++
Sbjct: 72 CVKNCGYAFRLQIASKEFLNELVRRFPERPPSRLNKIQVMI 112
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Frame = +3
Query: 309 MGIFGTSSPFDQD---VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH 479
MGIF + P ++R TS + E+ I+++ + + T +E R + ++L +
Sbjct: 1 MGIFSETVPITAVTTYIDRLTSRDTDDEDLSGIVQLSEAVNLTVTGPREASRTLRKKLKY 60
Query: 480 PDPHVQVHAATLLDACVANCGRXFHLEVASRDFETEFRRLLSRAQPPVAARLRXL 644
PH QV A +L A + N G F + E + + ++ R R +
Sbjct: 61 STPHEQVRALVILQALIENAGSHFLQNFSDEKLEDRMLQCATNSEYSKPVRKRAI 115
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 462 MRRLAHPDPHVQVHAATLLDACVANCGRXFHLEVASRDFETEFRRLLSRAQPPVAA 629
++RL+ DP V + + VA G HLE+ +D + + + + PPV +
Sbjct: 508 LKRLSKSDPCVLCTTSESGEHIVAGAGE-LHLEICLKDLQEDHAGIPLKISPPVVS 562
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 462 MRRLAHPDPHVQVHAATLLDACVANCGRXFHLEVASRDFETEFRRLLSRAQPPVAA 629
++RL+ DP V + + VA G HLE+ +D + + + + PPV +
Sbjct: 508 LKRLSKSDPCVLCTTSESGEHIVAGAGE-LHLEICLKDLQEDHAGIPLKISPPVVS 562
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 508 PHCSTPALQIAVVSSTWKSPRET---SRPSSGACCLARSLLSPLVS 636
P CSTP++ VS+T + ET S +S + RS LS L+S
Sbjct: 281 PRCSTPSVSSTFVSATSEPEVETYSVSTKNSSSNKNLRSSLSKLLS 326
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 367 SLVARSTS*SKGEEVPNIPILLTKKHLLDYMLLIKIL 257
SL+A + S ++ ++ + LT++ L DY +IKIL
Sbjct: 318 SLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVIKIL 354
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 457 ARRHSFALVEDAPARSHISMISPHSSLVLFSLV 359
AR+HSFA E+ A IS+ + HS V F V
Sbjct: 502 ARKHSFAEDEEREAPEDISLHNTHSD-VTFDFV 533
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 318 FGTSSPFDQDVERATSENNTSEEWGLIMEI 407
FG++ P D++ + T+ +NTS + L +I
Sbjct: 331 FGSTEPIDEEEKSKTASDNTSLQTSLFGKI 360
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 478 IPTHTYRFTPPHCSTPALQIAVVSSTWKSPRETSRPSSGAC 600
I TH +++ H TP + + +SS+ SP + + S C
Sbjct: 146 ISTHLAKYSIHHMGTPPSKPSFLSSSVSSPASSKQKSLFQC 186
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 7.2
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 413 ITYLHDQSPLLAGVIFTRCAFNILIKRRGSAKYPHF-VNKKTST*LYVIDKNIK*FLILK 237
+TYLH + +L R K P F +++K Y+ LI
Sbjct: 546 VTYLHRILNAIKETYSGYLLLTVLCMRLNIIKTPSFTLDEKIQESYYMAHYRP---LINL 602
Query: 236 SE*NRILQTKISCFMKNLRNKNTDYII 156
+ +L+++ C +KNL+N +TD +I
Sbjct: 603 RQPKPLLRSEADCIIKNLQNFSTDDLI 629
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 300 VNKMGIFGTSSPFDQDVERATSENNTSEEWGLIMEICD 413
+N++ ++ D D++ SEN SE+WGL ++C+
Sbjct: 1082 INQLSLYIFEMFMDDDLK--LSEN--SEDWGLFSKLCN 1115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,731
Number of Sequences: 5004
Number of extensions: 47423
Number of successful extensions: 131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -