Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_B06
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte grow... 72 4e-13
U97407-8|AAN84851.1| 397|Caenorhabditis elegans Prion-like-(q/n... 66 2e-11
U97407-7|AAB52480.2| 457|Caenorhabditis elegans Prion-like-(q/n... 66 2e-11
U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical pr... 58 5e-09
U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AF003385-3|AAB54248.2| 228|Caenorhabditis elegans Hypothetical ... 31 0.54
U80448-2|AAB37816.1| 321|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical pr... 28 6.6
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 6.6
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 6.6
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 6.6
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 6.6
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 6.6
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 6.6
AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical ... 27 8.7
AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical ... 27 8.7
>U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte growth
factor-regulatedtk substrate (hrs) family protein 1
protein.
Length = 729
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/93 (34%), Positives = 52/93 (55%)
Frame = +3
Query: 327 SSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHA 506
++ F + +++AT W I+ D + AK L+A+ +R+ H +PHV H
Sbjct: 2 ATKFQRVLDQATDSTLVEPNWEGIILCTDMIRSGEVPAKPSLQAIRKRMQHENPHVVNHT 61
Query: 507 ATLLDACVANCGRXFHLEVASRDFETEFRRLLS 605
+LDACV NCG H EVA+R+F +F+ L++
Sbjct: 62 LLVLDACVKNCGHKVHAEVATREFMEDFKNLVT 94
>U97407-8|AAN84851.1| 397|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform b protein.
Length = 397
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/103 (32%), Positives = 56/103 (54%)
Frame = +3
Query: 330 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 509
S ++ + + T+ T E W I+ CD +K ++++ +RL + DPHV + A
Sbjct: 2 SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 61
Query: 510 TLLDACVANCGRXFHLEVASRDFETEFRRLLSRAQPPVAARLR 638
++LD+C ANC F EV+S F E + L + +Q VA ++R
Sbjct: 62 SVLDSCWANCEERFRKEVSSAQFINELKALCTSSQRQVAEKMR 104
>U97407-7|AAB52480.2| 457|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform a protein.
Length = 457
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/103 (32%), Positives = 56/103 (54%)
Frame = +3
Query: 330 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 509
S ++ + + T+ T E W I+ CD +K ++++ +RL + DPHV + A
Sbjct: 10 SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 69
Query: 510 TLLDACVANCGRXFHLEVASRDFETEFRRLLSRAQPPVAARLR 638
++LD+C ANC F EV+S F E + L + +Q VA ++R
Sbjct: 70 SVLDSCWANCEERFRKEVSSAQFINELKALCTSSQRQVAEKMR 112
>U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical
protein C07A12.7a protein.
Length = 437
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Frame = +3
Query: 327 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 494
++P + +E AT N +E WGL MEICD + ++ +RA+ +RL + + V
Sbjct: 36 ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95
Query: 495 QVHAATLLDACVANCGRXFHLEVASRDFETEFRRLL 602
++ T+L+ V NC FH+ V ++DF + +L+
Sbjct: 96 VMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLI 131
>U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical
protein C07A12.7b protein.
Length = 403
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Frame = +3
Query: 327 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 494
++P + +E AT N +E WGL MEICD + ++ +RA+ +RL + + V
Sbjct: 36 ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95
Query: 495 QVHAATLLDACVANCGRXFHLEVASRDFETEFRRLL 602
++ T+L+ V NC FH+ V ++DF + +L+
Sbjct: 96 VMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLI 131
>AF003385-3|AAB54248.2| 228|Caenorhabditis elegans Hypothetical
protein R08F11.6 protein.
Length = 228
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 175 LFLKFFIKQEIFV*SILFHSDFSIKNYLIFLSITYNQVDVFLLTKWGYLALP 330
L KF + Q + V I +S S+ + LIFLS+TYNQ + GY +LP
Sbjct: 90 LLTKFGMHQTLIVFGI--YSMLSLFSKLIFLSLTYNQNVSLQNRQEGYCSLP 139
>U80448-2|AAB37816.1| 321|Caenorhabditis elegans Hypothetical
protein F59A3.4 protein.
Length = 321
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 498 VHAA-TLLDACVANCGRXFHLEVASRDFETEFRRLLSRAQPPVAARLR 638
VH A TLL +CV + G L +R ETE + +R VAA R
Sbjct: 90 VHLADTLLPSCVGDAGMTSLLSPPTRRSETEMSLMQAREDLDVAALAR 137
>Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical
protein D1046.4 protein.
Length = 583
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 142 ISYTKVFIIYRIFTVRISIFMAYFXNIVYFLKYAIXQLH*IL 17
I Y K+F+ ++ +V SIF+ YF +F++Y L+ I+
Sbjct: 287 IDYKKMFLCHQFQSVCFSIFI-YFMTFSFFVQYLPSYLYDIM 327
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 472 WRIPTHTYRFTPPHCSTPALQIAVVSSTWKSPRETSRPSSGACCLARSLLSPLVS 636
W+ PT T PA+ ++ W++ S SGA C A L +P V+
Sbjct: 137 WQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMTGQSTSMSGAECSAPFLSNPYVN 191
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 472 WRIPTHTYRFTPPHCSTPALQIAVVSSTWKSPRETSRPSSGACCLARSLLSPLVS 636
W+ PT T PA+ ++ W++ S SGA C A L +P V+
Sbjct: 137 WQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMTGQSTSMSGAECSAPFLSNPYVN 191
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 472 WRIPTHTYRFTPPHCSTPALQIAVVSSTWKSPRETSRPSSGACCLARSLLSPLVS 636
W+ PT T PA+ ++ W++ S SGA C A L +P V+
Sbjct: 137 WQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMTGQSTSMSGAECSAPFLSNPYVN 191
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 472 WRIPTHTYRFTPPHCSTPALQIAVVSSTWKSPRETSRPSSGACCLARSLLSPLVS 636
W+ PT T PA+ ++ W++ S SGA C A L +P V+
Sbjct: 137 WQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMTGQSTSMSGAECSAPFLSNPYVN 191
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 472 WRIPTHTYRFTPPHCSTPALQIAVVSSTWKSPRETSRPSSGACCLARSLLSPLVS 636
W+ PT T PA+ ++ W++ S SGA C A L +P V+
Sbjct: 137 WQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMTGQSTSMSGAECSAPFLSNPYVN 191
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 472 WRIPTHTYRFTPPHCSTPALQIAVVSSTWKSPRETSRPSSGACCLARSLLSPLVS 636
W+ PT T PA+ ++ W++ S SGA C A L +P V+
Sbjct: 137 WQSPTKTQLLIVMSWLLPAIIFGIMIYGWQAMTGQSTSMSGAECSAPFLSNPYVN 191
>AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical
protein T21D12.9c protein.
Length = 737
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 265 LSITYNQVDVFLLTKWGYLALPRLLIKMLNAQRVKITPARS 387
L ++YNQ+ F ++ W + P+L L++ R++ P+ S
Sbjct: 296 LDLSYNQIQSFHISSWSH--TPKLKWLSLHSNRIQSLPSGS 334
>AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical
protein T21D12.9a protein.
Length = 881
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 265 LSITYNQVDVFLLTKWGYLALPRLLIKMLNAQRVKITPARS 387
L ++YNQ+ F ++ W + P+L L++ R++ P+ S
Sbjct: 296 LDLSYNQIQSFHISSWSH--TPKLKWLSLHSNRIQSLPSGS 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,537
Number of Sequences: 27780
Number of extensions: 271925
Number of successful extensions: 723
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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