Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B05
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771...    36   0.015
06_01_0810 + 6111962-6112507                                           29   2.3  
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637     29   2.3  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    28   5.4  
08_02_1334 - 26224546-26225337                                         27   9.4  
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783...    27   9.4  
02_01_0018 + 119890-120238,120331-120424,120518-121529                 27   9.4  

>04_04_1580 -
           34576595-34576723,34576905-34576981,34577058-34577104,
           34577864-34577964,34578114-34578203,34578647-34578763,
           34578835-34578992,34579562-34579843,34580367-34580667
          Length = 433

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 97  HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 225
           +T V TS   PL +HH  +Q S + F+ RV + + + PH+PS F
Sbjct: 78  YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121


>06_01_0810 + 6111962-6112507
          Length = 181

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
 Frame = -2

Query: 276 SSAIGLVEGQNALNGPP-----EYGRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAG 112
           S+  G     +A   PP       G  MRQ E       T     VL     D+  +   
Sbjct: 66  STGEGSYSAASATQAPPVGRRARLGMLMRQEEQR---ETTATAATVLGAAGHDKKEVPPA 122

Query: 111 ADESVTAFHDHRSGE*QHNDLQLHHGKWH 25
            +E  TA    RSG       QLHHG WH
Sbjct: 123 EEEKKTA---RRSGFWARLQQQLHHGSWH 148


>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
          Length = 454

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = -2

Query: 345 SALALHAEIDEVIADSALGDVRRSSAIGLVEGQNALNGP-PEYGRYMRQAEMEVFNSLTE 169
           +A A +A ++   A   L     ++A+  +  +    G    +GR+   A++ VFN+   
Sbjct: 214 TAAAYNATVEFYWAPFLLQSNADNAAVHRISDRMVRRGSIGHHGRHWEGADVIVFNTYL- 272

Query: 168 HFRAVLHVMVVDQGPIDAGADESVTAF 88
            +   L   +++ GP DAG + S T +
Sbjct: 273 WWCTGLQFRILEDGPFDAGGNSSTTTW 299


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 36  HDEVANRCVATRRCGDRGMRSHFRRHQR 119
           H++  +R V    CG + ++ +F+RHQR
Sbjct: 405 HNKSCHRHVVCDVCGTKQLKKNFKRHQR 432


>08_02_1334 - 26224546-26225337
          Length = 263

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 92  AVTLSSAPASIGPWSTTMTCSTARKCSVREL 184
           +VTL+   A++GP  T    + A  C++R+L
Sbjct: 9   SVTLADQLAAVGPAGTAAATAAAGSCNLRDL 39


>05_04_0355 -
           20577189-20577275,20578001-20578129,20578252-20578371,
           20578505-20578741,20578983-20579258,20579375-20579508,
           20580006-20581632
          Length = 869

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 94  GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 216
           G   VG S NR +  +H +  S   + K+++NL   L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868


>02_01_0018 + 119890-120238,120331-120424,120518-121529
          Length = 484

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 297 ALGDVR--RSSAIGLVEGQNALNGPPEYGRYMRQA 199
           ALGD+    S +I L+E Q+ L  PP   R MR+A
Sbjct: 255 ALGDIAFAYSYSIILIEIQDTLRSPPAEARTMRKA 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,145,539
Number of Sequences: 37544
Number of extensions: 259187
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)