Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B05
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   5.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 166 MFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVNLRMKSERG 345
           M RK++  L  ++   P+    + +  +    T++     ITQ G G  F+ ++   ERG
Sbjct: 461 MNRKQISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIERG 520

Query: 346 S 348
           +
Sbjct: 521 T 521


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 310 YSRFRLG*CSQKQCYRSCRRPEC--PEWTSRIWKVHE 206
           Y R +   C  K+C     RPEC  PE+   + +  E
Sbjct: 234 YMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEE 270


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 192 PFQLASCTFHIREVHSGHSGLR 257
           P  L + T  +RE+H  ++GLR
Sbjct: 277 PEGLFASTRDLREIHLAYNGLR 298


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 310 YSRFRLG*CSQKQCYRSCRRPEC--PEW 233
           Y R +   C  K+C     RPEC  PE+
Sbjct: 31  YMRRKCQECRLKKCLTVGMRPECMVPEY 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,544
Number of Sequences: 438
Number of extensions: 2340
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)