Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B01
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.15 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   2.4  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   5.6  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   5.6  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    24   9.8  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    24   9.8  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    24   9.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 247 VRVHRANTGRSSNELDRQTTELERR 321
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 171 YXARSESIMRDSDVAFSHSAALAIAQVRRNGNK 73
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 432  GRGERSPRRWXQPRLAVPRQASTXRSEDTSQVXQPHSPAFQLSR 301
            GR    PR    P +  P   S   S  TS+  + H P+  LS+
Sbjct: 955  GRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSK 998


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 250 GLTNVSMSXMQGQVDYDFGVGGGVPIV--RCEERVDHE 143
           G ++ S+S ++ ++DY      G+P+V  +  E VD E
Sbjct: 11  GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 147 MRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLVEAIPRVIGR 4
           ++D D          I ++ R    + I+R HF T +L +A+  +I R
Sbjct: 243 VKDDDEGVRERGVELIVEMCRKLIASGITRLHFYTMNLEKAVKMIIER 290


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 435 HGRGERSPRRWXQPRLAVPRQASTXRSED 349
           HG   R    W + R A  R  ST  SED
Sbjct: 257 HGMCSRQKPTWFKARKAYIRSQSTETSED 285


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 95  CAIASAAECENATSLSLMIDSLLAXYDRDSPPDSKIVIN 211
           C I     C  A  L  + DSL+  Y+  SP   K VIN
Sbjct: 378 CEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 429 RGERSPRRWXQPRLAVPRQASTXRSEDTSQVXQPHSPAFQ 310
           RGERS       ++    Q    +++ TSQ    H PAFQ
Sbjct: 97  RGERSELAASNNQVTHIDQEHPSQTKSTSQPPSNHLPAFQ 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,000
Number of Sequences: 5004
Number of extensions: 26374
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)