Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B01
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50...    31   0.45 
12_01_0524 - 4167867-4168445                                           29   1.8  
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    27   5.6  
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917     27   7.3  
02_01_0054 - 404464-405152,406087-406618                               27   9.7  

>07_01_0069 +
           505291-505327,505726-505956,506317-506652,507025-507372,
           507735-508594,508902-508971,509157-509371,509477-509537,
           509606-509715,510644-510694,510794-510916
          Length = 813

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -2

Query: 210 LITILESGGESRSYXARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLV 31
           ++T  +   ES +     E ++RD+DVA S S       V R   K+  S+R    T   
Sbjct: 122 VVTDTDLANESGNGCTHGEGVLRDADVASSRSGNDLTPDVDRTLGKSKASKRQCDATTST 181

Query: 30  EAIP 19
            A P
Sbjct: 182 AAAP 185


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -1

Query: 346 QPSXAAPLPCVPTQSFVDPIHXKICLYSHGGLGLTNVSMSXMQGQVDYDFGVGGGVPIVR 167
           QPS AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 166 CEERVDHEGQ*C 131
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
 Frame = -2

Query: 438 IHGRGERSPRRWXQPR--------LAVPRQASTXRSEDTSQVXQPHSPAFQLSRLSIQFI 283
           IHG+G    RRW  P               A+   +E T+    P  P F     +   +
Sbjct: 410 IHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAMAISP-IPGFTGRGGAEASL 468

Query: 282 XRSACIRTVDSDSRMLACLXCRVRLITILESGGESRSYXARSESIMRDSDVAFSHSAALA 103
            RS        DS  LA + C         SG  S S+   +    R + +A +  AAL 
Sbjct: 469 RRSLAAACASMDSSSLARILC--------SSGSSSSSHATLAARHFRPALLAAAEPAALV 520

Query: 102 IAQVR 88
           +  VR
Sbjct: 521 VRAVR 525


>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
          Length = 447

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -1

Query: 214 QVDYDFGVGGGVPIVRCEERVDHEGQ*CCVFAFCRT 107
           +VD  FG GGG     C  R       C     CRT
Sbjct: 220 EVDTGFGGGGGSGEAHCTPRTSSRRSSCYATPLCRT 255


>02_01_0054 - 404464-405152,406087-406618
          Length = 406

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
 Frame = -1

Query: 370 LHXAFRGHQPSXAAPLPCVPTQSFVDP-------IHXKICLYSHGGLGLTNVSMSXMQGQ 212
           L  A  G   + A     V +  +VDP       +  K  +YS G L L  ++ S   G 
Sbjct: 255 LGSACEGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGI 314

Query: 211 VDYDFGVGGGVPIVRCEERVDHEG 140
              D G GGG    R   RV  EG
Sbjct: 315 PGPDGGAGGGNLTARLLPRVRTEG 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,339
Number of Sequences: 37544
Number of extensions: 228038
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)