Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_B01
(463 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor de... 32 1.1
BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor, n... 32 1.1
BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor, n... 32 1.1
AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein. 32 1.1
Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine r... 30 4.5
X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine ... 30 4.5
U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine r... 30 4.5
BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor, n... 30 4.5
BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor, n... 30 4.5
BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor, n... 30 4.5
AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine ... 30 4.5
Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine r... 29 5.9
X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine re... 29 5.9
X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine r... 29 5.9
U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine r... 29 5.9
L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine r... 29 5.9
DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor, n... 29 5.9
BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor, n... 29 5.9
>X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor delta
subunit protein.
Length = 517
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 200 IVINLTLHXRHANIRESESTVRIQADLXMNWIDKRLSWNAGEWG 331
+ + LTL +++E E T+ + W D RL WNA E+G
Sbjct: 54 VALALTL-SNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 200 IVINLTLHXRHANIRESESTVRIQADLXMNWIDKRLSWNAGEWG 331
+ + LTL +++E E T+ + W D RL WNA E+G
Sbjct: 54 VALALTL-SNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 200 IVINLTLHXRHANIRESESTVRIQADLXMNWIDKRLSWNAGEWG 331
+ + LTL +++E E T+ + W D RL WNA E+G
Sbjct: 54 VALALTL-SNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein.
Length = 517
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 200 IVINLTLHXRHANIRESESTVRIQADLXMNWIDKRLSWNAGEWG 331
+ + LTL +++E E T+ + W D RL WNA E+G
Sbjct: 54 VALALTL-SNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 PRNALWRPDVVLL-NAAXTTAGDYALRARVSNNGSXSW 461
P +LW PD+VL NA G + V +NG+ W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine
receptor beta-3 subunit protein.
Length = 423
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 PRNALWRPDVVLL-NAAXTTAGDYALRARVSNNGSXSW 461
P +LW PD+VL NA G + V +NG+ W
Sbjct: 71 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 108
>U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 PRNALWRPDVVLL-NAAXTTAGDYALRARVSNNGSXSW 461
P +LW PD+VL NA G + V +NG+ W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 PRNALWRPDVVLL-NAAXTTAGDYALRARVSNNGSXSW 461
P +LW PD+VL NA G + V +NG+ W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 PRNALWRPDVVLL-NAAXTTAGDYALRARVSNNGSXSW 461
P +LW PD+VL NA G + V +NG+ W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 PRNALWRPDVVLL-NAAXTTAGDYALRARVSNNGSXSW 461
P +LW PD+VL NA G + V +NG+ W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine
receptor beta-3 subunit precursor protein.
Length = 458
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 PRNALWRPDVVLL-NAAXTTAGDYALRARVSNNGSXSW 461
P +LW PD+VL NA G + V +NG+ W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 351 PRNALWRPDVVLLNAAXTTAGDYAL----RARVSNNGSXSW 461
P +WRPD+VL N A GD+A+ +A + ++G W
Sbjct: 114 PSELIWRPDIVLYNNAD---GDFAVTHLTKAHLFHDGRVQW 151
>X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine
receptor alpha-4 subunit protein.
Length = 627
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 351 PRNALWRPDVVLLNAAXTTAGDYAL----RARVSNNGSXSW 461
P +WRPD+VL N A GD+A+ +A + ++G W
Sbjct: 114 PSELIWRPDIVLYNNAD---GDFAVTHLTKAHLFHDGRVQW 151
>X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine
receptor protein.
Length = 602
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 351 PRNALWRPDVVLLNAAXTTAGDYAL----RARVSNNGSXSW 461
P +WRPD+VL N A GD+A+ +A + ++G W
Sbjct: 89 PSELIWRPDIVLYNNAD---GDFAVTHLTKAHLFHDGRVQW 126
>U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 351 PRNALWRPDVVLLNAAXTTAGDYAL----RARVSNNGSXSW 461
P +WRPD+VL N A GD+A+ +A + ++G W
Sbjct: 114 PSELIWRPDIVLYNNAD---GDFAVTHLTKAHLFHDGRVQW 151
>L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha 4 subunit protein.
Length = 627
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 351 PRNALWRPDVVLLNAAXTTAGDYAL----RARVSNNGSXSW 461
P +WRPD+VL N A GD+A+ +A + ++G W
Sbjct: 114 PSELIWRPDIVLYNNAD---GDFAVTHLTKAHLFHDGRVQW 151
>DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 4 protein.
Length = 627
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 351 PRNALWRPDVVLLNAAXTTAGDYAL----RARVSNNGSXSW 461
P +WRPD+VL N A GD+A+ +A + ++G W
Sbjct: 114 PSELIWRPDIVLYNNAD---GDFAVTHLTKAHLFHDGRVQW 151
>BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha 4 protein.
Length = 627
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 351 PRNALWRPDVVLLNAAXTTAGDYAL----RARVSNNGSXSW 461
P +WRPD+VL N A GD+A+ +A + ++G W
Sbjct: 114 PSELIWRPDIVLYNNAD---GDFAVTHLTKAHLFHDGRVQW 151
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,750,293
Number of Sequences: 237096
Number of extensions: 1095282
Number of successful extensions: 2380
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2380
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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