Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_A24
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0370 + 2909216-2909797 43 3e-04
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 31 1.3
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 30 1.8
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 29 3.1
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 4.1
06_03_1181 - 28227746-28229115,28229130-28229307 29 5.4
01_05_0657 + 24034198-24036306 29 5.4
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 28 7.1
04_04_1435 + 33585508-33586490,33586646-33586664 28 9.4
01_07_0005 + 40364385-40364732,40365299-40365448 28 9.4
>05_01_0370 + 2909216-2909797
Length = 193
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/93 (26%), Positives = 40/93 (43%)
Frame = +1
Query: 247 MGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAA 426
M A++++W E G L + QL+ +W P+ GL + ++ A
Sbjct: 98 MALAAWMVWAE-GGLHRRPGATLAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGA 156
Query: 427 VATTLSFGSVNKTAGLLLVPYLAWLGYASSLSY 525
A FG VN AG L P +AW + ++Y
Sbjct: 157 AACARGFGGVNPVAGDLAKPCVAWAVLLAVINY 189
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Frame = +1
Query: 439 LSFGSV-NKT---AGLLLVPYLAWLGYASSL 519
L+FGS+ N T G+LLV LAWLG ASSL
Sbjct: 551 LTFGSLANSTPYLGGILLVIVLAWLGAASSL 581
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -3
Query: 509 AYPSQAKYGTSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC 330
AYP +++ T N + V+ A E + SF+ +K+G ++ S
Sbjct: 695 AYPLWSRHETQNYETDRMLKSTSQVIDQAMAQLWEAKVKFVNVSFSVEKLGRSRSVAISD 754
Query: 329 TPYNVRGRTASSVKPSHSSQ 270
+ + R TA S +PS SQ
Sbjct: 755 SGHRSRQSTADSNEPSGDSQ 774
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 22 ISKFKLFPKDFVMANWPALGSIILPNVGGWANGLF 126
ISKF++ P++ V+ PA+G G AN ++
Sbjct: 4 ISKFRIRPENLVLITLPAIGGFYSNTTGSCANHIY 38
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 163 SWYDELKKPSWTPPK 207
SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>06_03_1181 - 28227746-28229115,28229130-28229307
Length = 515
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 503 PSQAKYG--TSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQ 345
PSQA+ T N P +T+P ++ T P +I + + SF P I +Q Q
Sbjct: 103 PSQAQIPILTQNTPQAQITIPTQNLAQTLIPSQNQIPIQTHI-SFQP-HIPIQTQ 155
>01_05_0657 + 24034198-24036306
Length = 702
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 385 KLAFIEISVLSG-AAVATTLSFGSVNKTAGLLLVPYLAWLGYASSL---SYYIWKNNPKP 552
+L IE+ VL G AA+ L GS + + V W+ YA+S+ SY + P
Sbjct: 3 RLVRIEVLVLLGVAALFVLLILGSYRRQSSRNAVRVSIWVAYAASIPMVSYTLGLMQSSP 62
Query: 553 VKGQ*RS*QWNILLY 597
K S W I+L+
Sbjct: 63 YKNSLFS-VWAIILF 76
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +1
Query: 439 LSFGSV-NKT---AGLLLVPYLAWLGYASSL 519
LSFGS+ N T G+LLV LAWLG SL
Sbjct: 529 LSFGSLANSTPYLGGILLVIVLAWLGAVRSL 559
>04_04_1435 + 33585508-33586490,33586646-33586664
Length = 333
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 57 NGKLACTWFNYPSKC 101
+G+L C WF YP +C
Sbjct: 244 DGELYCVWFRYPIRC 258
>01_07_0005 + 40364385-40364732,40365299-40365448
Length = 165
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 406 SVLSGAAVATTLSFGSVNKTAGLLLVPYLAWLGYASSLS 522
++L GA+VA L GSV GLLL+P++A + LS
Sbjct: 58 TMLLGASVALMLC-GSVTFAIGLLLMPWVAGVALLFGLS 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,740,531
Number of Sequences: 37544
Number of extensions: 496960
Number of successful extensions: 1281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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