Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_A23
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...   104   2e-23
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    27   2.5  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   5.8  

>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score =  104 bits (249), Expect = 2e-23
 Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 12/187 (6%)
 Frame = +1

Query: 298 AKDWALMHGVGMRDKKHFNKDVIQIA---PFILLPSPFPKTEFMKAVELQPVLNELMHKV 468
           A+D+A  HGV   +    +K+   IA   P  L PS  P   F++AV +Q   N+L  K+
Sbjct: 18  ARDFAFAHGVVFTELS-VSKEGRNIATQIPITLFPSVIPHGAFVEAVSVQKAYNKLYAKI 76

Query: 469 AHDDEFLEQTLQNALQVDEFTANLYDIWLKVK------NEGISQSLSLGLFRSDYLLQHP 630
           A+D EFL   LQ+  + DEF   L++++ K +       E   Q LSLG+FRSDY++   
Sbjct: 77  ANDYEFLRLHLQSITKYDEFMNKLWNLYQKHREAVAHLKENQFQPLSLGVFRSDYMVHQD 136

Query: 631 DGNV-LKQVEFNTIASSFGAITSHLPNMSRYILRQ-LGHGDLIKN-MPENRALSGLCSGI 801
           D  +  KQVEFNTI+ SFG ++  + N+  Y  +  L    L  N +  N ++SG+C+GI
Sbjct: 137 DSFIGCKQVEFNTISVSFGGVSKAVSNLHAYCSQSGLYRKPLTTNYLTVNTSVSGICTGI 196

Query: 802 IXAFDLF 822
             A D +
Sbjct: 197 SNAVDAY 203


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +1

Query: 406 KTEFMKAVELQP--VLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGIS 579
           +TE +    LQ   +L     +V H+ + L+Q  Q  + +D        +     NEG+S
Sbjct: 192 RTEELTIQPLQERVLLTSFTEEVVHNRDILKQPTQTTVSIDGKEFERVAL-----NEGVS 246

Query: 580 QSLSLGLFRSDYLLQHPDGN 639
            +LSL  FR+  +L    G+
Sbjct: 247 VTLSLREFRAAVILAEALGS 266


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 337 DKKHFNKDVIQIAPFILLPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTLQNALQ 516
           D+ + +   I+   F+ +P+PF K++   AVE   + + + H     D   +Q ++ A Q
Sbjct: 369 DRLNLSFGTIKEFDFVGVPAPFTKSQVDSAVE--QLKSRIAHFKEQQDSVTKQRIEKAKQ 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,425
Number of Sequences: 5004
Number of extensions: 65233
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)