Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_A23
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0593 + 20874459-20874575,20875258-20875427,20875597-208756... 111 7e-25
12_01_0933 - 9263023-9263146,9263224-9263416,9263495-9263634,926... 82 6e-16
02_04_0076 - 19486360-19488723 33 0.28
11_06_0078 - 19854185-19856170 31 1.1
02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544 30 2.6
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 29 4.6
01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756 29 6.1
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 28 8.0
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 28 8.0
>12_02_0593 +
20874459-20874575,20875258-20875427,20875597-20875672,
20875764-20875894,20876570-20876692,20876780-20876893,
20877163-20877239,20877405-20877472,20877740-20877861,
20878041-20878180,20878411-20878603,20878692-20878827
Length = 488
Score = 111 bits (267), Expect = 7e-25
Identities = 64/191 (33%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Frame = +1
Query: 286 VIEKAKDWALMHGVGMRDKKHFNKDVIQ-----IAPFILLPSPFPKTEFMKAVELQPVLN 450
++ +A W +HG+ + D+ + APF LLP+ P++ + +A EL P+ N
Sbjct: 18 MVREATAWCALHGLVVGDRADPRSGTVPGVGLVHAPFSLLPTHLPESHWRQACELAPIFN 77
Query: 451 ELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISQSLSLGLFRSDYLLQHP 630
EL+ +V+ D +FL+ +L QVD+FT+ L +I K+ +++ LGL RSDY+L
Sbjct: 78 ELVDRVSLDGDFLQDSLSKTKQVDDFTSRLLEIHRKMMEINKEENIRLGLHRSDYMLD-S 136
Query: 631 DGNVLKQVEFNTIASSFGAITSHLPNMSRYILRQLGHGDLI--KNMPENRALSGLCSGII 804
+ N L Q+E NTI++SF + S + + R ++ Q GH + K +P N A S +
Sbjct: 137 ETNSLLQIELNTISASFPGLGSLVSELHRTLIDQYGHLFCLDSKRVPGNEASSQFAKALA 196
Query: 805 XAFDLFGVLNA 837
A+D F V +A
Sbjct: 197 RAWDEFNVDSA 207
>12_01_0933 -
9263023-9263146,9263224-9263416,9263495-9263634,
9263760-9263881,9263970-9264039,9264463-9264498,
9264567-9264692,9265294-9265424,9265549-9265645,
9265858-9266027,9267817-9267874,9268758-9269074
Length = 527
Score = 81.8 bits (193), Expect = 6e-16
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Frame = +1
Query: 373 APFILLPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTL-------QNALQVDEFT 531
APF LLP F K + +AVEL P+ NEL+ +V+ D +FL++TL +VD FT
Sbjct: 138 APFALLPMSFSKVYWDQAVELAPLFNELVDRVSLDGDFLQETLASFSLSFSRTKEVDSFT 197
Query: 532 ANLYDIWLKVKNEGISQSLSLGLFRSDYLLQHPDGNVLKQVEFNTIASSFGAITSHLPNM 711
L DI K+ + + LGL RSDY++ +L QVE NTI++S + + +
Sbjct: 198 GRLLDIHAKMMKLNKKEDVRLGLTRSDYMIDGATDQLL-QVELNTISTSSNGLACGVCEL 256
Query: 712 SRYILRQ 732
R ++RQ
Sbjct: 257 HRNLIRQ 263
>02_04_0076 - 19486360-19488723
Length = 787
Score = 33.1 bits (72), Expect = 0.28
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 509 AFCKVCSKNSSSWATLCMSSFKTGCSSTA 423
AF +NSSSW ++ M+S + GC TA
Sbjct: 640 AFRNTSGRNSSSWTSIIMASVENGCPETA 668
>11_06_0078 - 19854185-19856170
Length = 661
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 571 GISQSLSLGLFRSDYLLQHPD---GNVLKQVEFNTIASSFGAITSHLPNMSRYILRQLGH 741
G +++LS SD L+ H D GN+L S FG S ++RY L +G
Sbjct: 125 GCAEALSYMHLSSDSLVYHGDIKPGNILLDANLTAKVSDFGISKSLSGGLTRYTLHIMGC 184
Query: 742 GDLI 753
D +
Sbjct: 185 EDYV 188
>02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544
Length = 360
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 550 WLKVKNEGISQSLSLGLFRSDYLLQHPDGNVLKQVEFNTIASSF-GAITSHLPNMSRYIL 726
W +V N I + L LG+ + + + GN+ K + G I ++L N+++ L
Sbjct: 119 WSEVGNLAILEDLRLGINKLSSSISNSIGNLAKLSVLILWGNQLSGHIPNNLGNLTKLSL 178
Query: 727 RQLGHGDLIKNMPE 768
L H L +++P+
Sbjct: 179 LDLCHNQLSEHIPQ 192
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = +1
Query: 373 APFILLPSPFPKT-------EFMKAVELQPVLNELMHKVAHDDEFLEQTLQNAL 513
APF L P P+P T F K +E ++ +M KV D L+ L AL
Sbjct: 1455 APFGLFPRPWPLTVDASEGSRFSKVIEHFRLVGRVMAKVLQDGRLLDLPLSTAL 1508
>01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756
Length = 785
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 544 DIWLKVKNEGISQSLSLGLF-RSDYLLQHPDGNVLKQVEFNTIASSFGAIT 693
D+W +++ I Q+ +L D +LQHPDG+++ NT S +T
Sbjct: 106 DVWSANRDQLIRQNSTLSFTAEGDLVLQHPDGSLVWST--NTSGQSVAGMT 154
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 553 LKVKNEGISQSLSLGLFRSDYL 618
+ V N G+ + +S+GLF +DYL
Sbjct: 877 ISVSNRGLRRVMSMGLFNTDYL 898
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 478 DEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISQSLSLGLFRSDY--LLQH 627
DE L++ + D T +LYD+W+ + + + +G SDY +QH
Sbjct: 461 DELLKEASKQVQNPDNETQSLYDLWMASDSSSMIKIGRIGGGGSDYSAFVQH 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,019,978
Number of Sequences: 37544
Number of extensions: 395631
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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