Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_A23
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.65 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.6  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   8.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 521 STCRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINSVFGK 399
           S CR   +   +  S WA   MS   TG   T F+  VF K
Sbjct: 640 SACRDIPEEFLRPESGWAIGAMSFSATGILITLFVCGVFLK 680


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 572 PSFFTFNHMSYKFAVNSSTCRAFCK 498
           P  +      ++FA  S  C+ FCK
Sbjct: 59  PCIYALFSKDFRFAFKSIICKCFCK 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 572 PSFFTFNHMSYKFAVNSSTCRAFCK 498
           P  +      ++FA  S  C+ FCK
Sbjct: 507 PCIYALFSKDFRFAFKSIICKCFCK 531


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 96  DVLRKKNYNYLQQRINY 146
           +V++ KN++   QRINY
Sbjct: 212 EVIKIKNFDNCDQRINY 228


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 560 TFNHMSYKFAVNSSTCRAFCKVCSK 486
           T + +S+K  VN S C A C    K
Sbjct: 20  TCDLLSFKGQVNDSACAANCHSLGK 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,111
Number of Sequences: 438
Number of extensions: 4552
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)