Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_A21
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.7  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 154 CPICKADLKSASQLTNHFESLHQE 225
           CP C+ +      L  HF+  H++
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQ 31



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +1

Query: 148 FLCPICKADLKSASQLTNHFESLHQEDQDVLKSL 249
           ++C  C    ++ + LT H    H+    +LK L
Sbjct: 36  YVCEFCNRRYRTKNSLTTHKSLQHRGSSGMLKRL 69


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 613 CRLCGSILCHDCSV 654
           C+LCG +LC   S+
Sbjct: 8   CQLCGKVLCSKASL 21



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 148 FLCPICKADLKSASQLTNHFESLHQEDQD 234
           F C +C   L S + L  H    H E Q+
Sbjct: 6   FTCQLCGKVLCSKASLKRHVADKHAERQE 34


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 151 LCPICKADLKSASQLTNHFESLHQE 225
           +C ICK    S + L NH    H++
Sbjct: 34  ICNICKRVYSSLNSLRNHKSIYHRQ 58


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 190 QLTNHFESLHQE-DQDVLKSLKDIFGKAKTIILNNENADLKETFARAL 330
           ++T   +++ QE   DVL S  D++    T+  NN+  +   T   A+
Sbjct: 354 EITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSATVKAAI 401


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 190 QLTNHFESLHQE-DQDVLKSLKDIFGKAKTIILNNENADLKETFARAL 330
           ++T   +++ QE   DVL S  D++    T+  NN+  +   T   A+
Sbjct: 392 EITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSATVKAAI 439


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 703 KPVSNPELKLTEKNGLRLCE 762
           +PV N   +LT K GLRL +
Sbjct: 37  RPVGNNSDRLTVKMGLRLSQ 56


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 682 IINPSAPKPVSNPELKLTEKNGLRLCE 762
           ++   +P P  N  LK T  N   LCE
Sbjct: 197 LVGTWSPDPAINRRLKETYSNMCALCE 223


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 682 IINPSAPKPVSNPELKLTEKNGLRLCE 762
           ++   +P P  N  LK T  N   LCE
Sbjct: 197 LVGTWSPDPAINRRLKETYSNMCALCE 223


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 682 IINPSAPKPVSNPELKLTEKNGLRLCE 762
           ++   +P P  N  LK T  N   LCE
Sbjct: 197 LVGTWSPDPAINRRLKETYSNMCALCE 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,525
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)