Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_A14
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0164 + 15265878-15268701,15268782-15269200 30 3.0
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 29 4.0
06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682 29 4.0
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 29 4.0
03_01_0017 - 148934-148999,149000-149074,149343-149408,149737-14... 29 4.0
01_06_0258 + 27950196-27950749,27953670-27954570 29 4.0
09_02_0001 - 2857651-2857923,2858089-2858283 29 5.2
06_03_0188 - 17691582-17692241 29 5.2
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 29 6.9
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 29 6.9
01_06_1740 - 39575614-39576981 28 9.2
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 415 WFKNDSPVYEYDVESNELIDSSPTSI 492
W N + +Y DVE+N L D PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 29.5 bits (63), Expect = 4.0
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +2
Query: 704 GWCSRAASRD-----TPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLA 868
GW R S+ TPS S ++ CP+K+T+ FA A+ S S+ +T L+
Sbjct: 32 GWMIRCFSKRVGIQFTPSAASAAASASSCPVKKTQCPCSFAVAT-SISSSTCTHFTPQLS 90
Query: 869 KPKTLSARRRLKHL 910
LS++ + K L
Sbjct: 91 SAHLLSSQLKEKEL 104
>06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682
Length = 186
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 740 SPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRLKHLS 913
SP P S+ R C +R R S PP++ A TS P + LKHL+
Sbjct: 22 SPSPPASSIRFCR-GGSRGGRAVVSLRASVPPAAAAATTSGSIAPAISLTEKALKHLN 78
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 29.5 bits (63), Expect = 4.0
Identities = 28/96 (29%), Positives = 44/96 (45%)
Frame = +2
Query: 614 LLSSRNALSCSR*SLASWSPIAPTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLKRTR 793
+L +R L+ + LA +SP + SA+ CS AAS + S S RM T
Sbjct: 1 MLFARRPLATAASHLAPFSPPLLLFFASASSSCSSAASPSSASGPRGCSAVRM----ETG 56
Query: 794 A*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRL 901
A P S+GA W++ +P+T+S + +
Sbjct: 57 AVE---------PASTGAIWSTPSVEPRTISVGKEI 83
>03_01_0017 -
148934-148999,149000-149074,149343-149408,149737-149793,
150422-150537,150821-151103,151413-151468,151585-151682,
152233-152291,152747-152818,152892-153077,153303-153305
Length = 378
Score = 29.5 bits (63), Expect = 4.0
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +1
Query: 73 SPSNRSELRIDFAKKXFFLRXSHQYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLS 252
SPS + + DF K +L + +Y + R L + TV + + KLL
Sbjct: 22 SPSRNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPNHVAIKIALELKKLL- 80
Query: 253 DIDNSIENGVQAKSDGS---HKYLSITQGPLPS 342
+DNS+ + ++ + G ++Y +T PL S
Sbjct: 81 -VDNSLLDLMEKRGYGEDYINRYKMMTSAPLTS 112
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 29.5 bits (63), Expect = 4.0
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 710 CSRAASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 889
C RAA+ + SPR+ S P R R +W+ P S AT +L P +L+A
Sbjct: 115 CHRAAAAASASPRNASSLPAPAPASPRRTFRPDKSRTWAPIPCSSATCRESL--PFSLAA 172
>09_02_0001 - 2857651-2857923,2858089-2858283
Length = 155
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 698 ATGWCSRAASRDTPSPRSPGSTDRMCP 778
ATGWCS + P R PG+ +R P
Sbjct: 98 ATGWCSASRRSLLPVVRHPGTIERPLP 124
>06_03_0188 - 17691582-17692241
Length = 219
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 680 PTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLK 784
P WTT+ T A+ R+T P P + + PL+
Sbjct: 35 PPWTTTTTTMAVPASPRETAFPTKPSNANVSSPLR 69
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 391 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 540
GSP P +H F+N++ E ++ SN +SS I ++ T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 316 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 444
S +GP P+ HT T ++T A S P W K+ +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397
>01_06_1740 - 39575614-39576981
Length = 455
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 775 PIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFG 888
P+ + PR VLRS LV+S + + D Y Q + G
Sbjct: 369 PLHEGPRGSVLRSVHLVVSEVTMTQEDVYEWQNATSKG 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,032,945
Number of Sequences: 37544
Number of extensions: 545083
Number of successful extensions: 1709
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1708
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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