Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_A12
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1396 - 26742694-26742915,26743736-26743771                       59   4e-09
02_05_0323 - 27928385-27928534,27930326-27930430                       41   0.001
11_01_0184 - 1444246-1444434,1446291-1446719                           41   0.001
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135...    39   0.004
12_02_0836 + 23550376-23550470,23551617-23551803                       36   0.050
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784     29   3.3  

>08_02_1396 - 26742694-26742915,26743736-26743771
          Length = 85

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 132 ADSELQDFLXXXXXXXXXXXXIHEFNSFCWDKCIEK-PGAKLDSRTETCITNCVERFIDT 308
           ADS L   L            + +  S CWDKCI   PG+K  S   TC+TNC +RF+D 
Sbjct: 15  ADSYLNITLQQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDM 74

Query: 309 SLLITNRF 332
           S++I  RF
Sbjct: 75  SVIIAKRF 82


>02_05_0323 - 27928385-27928534,27930326-27930430
          Length = 84

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 216 CWDKCIEKPGAKLDSRTETCITNCVERFIDTSLLIT 323
           C+ KC+ KPG+ L     +CI+ CV+R+I+ + +++
Sbjct: 41  CFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVS 76


>11_01_0184 - 1444246-1444434,1446291-1446719
          Length = 205

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 195 IHEFNSFCWDKCIEKP-GAKLDSRTETCITNCVERFIDTSLLITNR 329
           + +    CWDKCI    G+   +   +C++NC +RF +  +LI  R
Sbjct: 155 VAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQR 200


>12_01_0183 -
           1350451-1350477,1350887-1350969,1350977-1352696,
           1354258-1354428,1355892-1355939
          Length = 682

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 195 IHEFNSFCWDKCIEKP-GAKLDSRTETCITNCVERFIDTSLLITNR 329
           + +    CWDKCI    G+   +   +C++NC +RF++  +L   R
Sbjct: 28  VAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLELKMLTMQR 73


>12_02_0836 + 23550376-23550470,23551617-23551803
          Length = 93

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 216 CWDKCIEKPGAK-LDSRTETCITNCVERFIDTSLLITNRFAQM 341
           C+  C++    K LD + E+C+  C E+F+  S+ +  RFA++
Sbjct: 43  CFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAEL 85


>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
          Length = 1035

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 503  YYYTTTVKQSIVNSNLLIYFYTNINLKFSL 414
            YY     K SI+ SNL  Y Y  I+ K+S+
Sbjct: 1002 YYKKALTKGSILRSNLSTYLYKRISKKYSI 1031


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,127,826
Number of Sequences: 37544
Number of extensions: 332438
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)