Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_A12
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-4|AAF60525.1|   83|Caenorhabditis elegans Human ddp rel...    51   1e-06
AF150086-1|AAD39993.1|   83|Caenorhabditis elegans small zinc fi...    49   3e-06
Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical pr...    39   0.005
AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc fi...    39   0.005
U61947-12|AAO44913.1|   78|Caenorhabditis elegans Transport to i...    33   0.18 
U61947-11|AAB03140.1|   90|Caenorhabditis elegans Transport to i...    33   0.18 
AF150108-1|AAD40014.1|   90|Caenorhabditis elegans small zinc fi...    33   0.18 
AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    33   0.24 
AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical ...    29   3.0  
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AF106579-7|AAC78199.2|  391|Caenorhabditis elegans Hypothetical ...    28   9.0  
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.       28   9.0  
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ...    28   9.0  
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ...    28   9.0  
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ...    28   9.0  
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ...    28   9.0  

>AC024765-4|AAF60525.1|   83|Caenorhabditis elegans Human ddp
           related protein 1 protein.
          Length = 83

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 195 IHEFNSFCWDKCIE--KPGAKLDSRTETCITNCVERFIDTSLLITNRFAQM 341
           +H     CWD C    +P +K+D +T+TCI NCV R ID S  +    ++M
Sbjct: 28  VHTLTGRCWDVCFADYRPPSKMDGKTQTCIQNCVNRMIDASNFMVEHLSKM 78


>AF150086-1|AAD39993.1|   83|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 83

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 195 IHEFNSFCWDKCIE--KPGAKLDSRTETCITNCVERFIDTSLLITNRFAQM 341
           +H     CWD C    +P +K+D +T+TC  NCV R ID S  +    ++M
Sbjct: 28  VHTLTGRCWDVCFADYRPPSKMDGKTQTCFQNCVNRMIDASNFMVEHLSKM 78


>Z96047-1|CAB09410.1|  108|Caenorhabditis elegans Hypothetical
           protein DY3.1 protein.
          Length = 108

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +3

Query: 195 IHEFNSFCWDKCIEKPGAKLDSRTETCITNCVERFIDTSLLITNRFAQMLEK 350
           + + +  C +KCI  PG+ L S  + C+  C++RF+++  L++    + L++
Sbjct: 38  VTDISEKCTNKCITAPGSSLASGEKQCLQRCMDRFMESWNLVSQTLQKRLQE 89


>AF144704-1|AAD39955.1|  108|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 108

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +3

Query: 195 IHEFNSFCWDKCIEKPGAKLDSRTETCITNCVERFIDTSLLITNRFAQMLEK 350
           + + +  C +KCI  PG+ L S  + C+  C++RF+++  L++    + L++
Sbjct: 38  VTDISEKCTNKCITAPGSSLASGEKQCLQRCMDRFMESWNLVSQTLQKRLQE 89


>U61947-12|AAO44913.1|   78|Caenorhabditis elegans Transport to
           inner mitochondrialmembrane (yeast tim) protein 9.1,
           isoform b protein.
          Length = 78

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 10/42 (23%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 216 CWDKCIEKPGAK-LDSRTETCITNCVERFIDTSLLITNRFAQ 338
           C++ C+ + G++ +  + E+C  NC+++F+  +  ++ RF +
Sbjct: 24  CFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQE 65


>U61947-11|AAB03140.1|   90|Caenorhabditis elegans Transport to
           inner mitochondrialmembrane (yeast tim) protein 9.1,
           isoform a protein.
          Length = 90

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 10/42 (23%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 216 CWDKCIEKPGAK-LDSRTETCITNCVERFIDTSLLITNRFAQ 338
           C++ C+ + G++ +  + E+C  NC+++F+  +  ++ RF +
Sbjct: 24  CFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQE 65


>AF150108-1|AAD40014.1|   90|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 90

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 10/42 (23%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 216 CWDKCIEKPGAK-LDSRTETCITNCVERFIDTSLLITNRFAQ 338
           C++ C+ + G++ +  + E+C  NC+++F+  +  ++ RF +
Sbjct: 24  CFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQE 65


>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -3

Query: 560 QTTITCSNSDFLSLNMQNNYYYTTTVKQSIVNSNLLIYFYTNINLKFSLYYFMN*N*KFQ 381
           Q  I C  S ++S   Q N Y TTT   SI   +L ++ +T     FS+ YF+  + KF 
Sbjct: 165 QKFIFCFLSVYISRIFQENLYSTTTTYTSISLFSLSLFPFT---FPFSIPYFLF-SYKFP 220

Query: 380 IFYTSMHSAP 351
            F  ++H+ P
Sbjct: 221 SFCRNIHTIP 230


>AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical
           protein K10C9.3 protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 139 PNFRISXYKKNKRHSSKHRYTNLIVSVGTSVLKNLELSW-TLGPKHVSQTVWKDSLILH 312
           PNF    Y +N R + +H   NLI     S+   L + W  L PK   Q+ WK     H
Sbjct: 64  PNFENGSYPQNCRGTPRHFDENLI----KSIEDRLVVVWPNLYPKKTIQSFWKHEYDKH 118


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -3

Query: 569 CALQTTITCSNSDFLSLNMQNNYYYTTTVKQSIVNSNLLIYFYTNI 432
           C+++  I   N+ F+ +      YY   V  ++ N+NLLI++Y++I
Sbjct: 74  CSIRCAIIIVNNFFVFM------YYIFLVLVNVCNNNLLIFYYSSI 113


>AF106579-7|AAC78199.2|  391|Caenorhabditis elegans Hypothetical
           protein F54E2.1 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 560 QTTITCSNSDFLSLNMQNNYYYTTTVKQSIVNSNLLIYFYTNIN 429
           QT IT + S+  +L + N + Y TT KQS  + +  +Y   NIN
Sbjct: 93  QTLITTNLSNG-TLALMNGFIYVTTSKQS-TDQSFRVYSVDNIN 134


>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
          Length = 1666

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -3

Query: 557 TTITCSNSDFLSLNMQNNYYYTTTVKQSIVNS---NLLIYFYTNI 432
           +T  C+ SD+ SL  QN+YY  +    S+ +S   +L+++   NI
Sbjct: 493 STARCAPSDYCSLPQQNDYYPRSMSGSSVSSSRQEDLMMHSNNNI 537


>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
           protein W03F11.6e protein.
          Length = 1039

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -3

Query: 557 TTITCSNSDFLSLNMQNNYYYTTTVKQSIVNS---NLLIYFYTNI 432
           +T  C+ SD+ SL  QN+YY  +    S+ +S   +L+++   NI
Sbjct: 491 STARCAPSDYCSLPQQNDYYPPSMSGSSVSSSRQEDLMMHSNNNI 535


>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
           protein W03F11.6d protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -3

Query: 557 TTITCSNSDFLSLNMQNNYYYTTTVKQSIVNS---NLLIYFYTNI 432
           +T  C+ SD+ SL  QN+YY  +    S+ +S   +L+++   NI
Sbjct: 491 STARCAPSDYCSLPQQNDYYPPSMSGSSVSSSRQEDLMMHSNNNI 535


>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
           protein W03F11.6c protein.
          Length = 1419

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -3

Query: 557 TTITCSNSDFLSLNMQNNYYYTTTVKQSIVNS---NLLIYFYTNI 432
           +T  C+ SD+ SL  QN+YY  +    S+ +S   +L+++   NI
Sbjct: 491 STARCAPSDYCSLPQQNDYYPPSMSGSSVSSSRQEDLMMHSNNNI 535


>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
           protein W03F11.6a protein.
          Length = 1658

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -3

Query: 557 TTITCSNSDFLSLNMQNNYYYTTTVKQSIVNS---NLLIYFYTNI 432
           +T  C+ SD+ SL  QN+YY  +    S+ +S   +L+++   NI
Sbjct: 491 STARCAPSDYCSLPQQNDYYPPSMSGSSVSSSRQEDLMMHSNNNI 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,265,475
Number of Sequences: 27780
Number of extensions: 354730
Number of successful extensions: 782
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)