Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_A12
(808 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 4.4
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 22 5.8
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 22 5.8
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 22 5.8
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 22 5.8
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 7.7
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.6 bits (46), Expect = 4.4
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = -2
Query: 732 LT*TNIRYLF*TNKIQA*TKRLFPHKFCIGAIK--------VQHVLEGNR*LRQTSTDMH 577
LT + YL TN+I+ +F +CI I V HV+ + LR+ + M+
Sbjct: 194 LTSCSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMN 253
Query: 576 YSLCVTNNN 550
+N N
Sbjct: 254 VDSLRSNAN 262
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 491 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 399
+++ + +++N Y Y N N LYY +N
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 491 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 399
+++ + +++N Y Y N N LYY +N
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 491 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 399
+++ + +++N Y Y N N LYY +N
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 491 TTVKQSIVNSNLLIYFYTNINLKFSLYYFMN 399
+++ + +++N Y Y N N LYY +N
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 7.7
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -3
Query: 524 SLNMQNNYYYTTTVKQSIVNSNLL 453
S N NNYY K+ N N +
Sbjct: 310 SCNYSNNYYNNNNYKKLYYNINYI 333
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,060
Number of Sequences: 438
Number of extensions: 5155
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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