Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_A09
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    32   0.074
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    29   0.52 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    28   0.91 
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    28   1.2  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    27   2.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.7  

>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 31.9 bits (69), Expect = 0.074
 Identities = 12/49 (24%), Positives = 30/49 (61%)
 Frame = -3

Query: 508 SIFKLSFQNYIIHEIYMIKNNIQAANIMKIKENILFLLMNRSHYLKSLK 362
           ++ +L FQ Y++ + +M+ NN QAA +M    + +  + + +  ++++K
Sbjct: 321 TLSRLPFQKYLVLKYHMLINNAQAAGMMAFSSSSISAIEHSAKIIQAIK 369


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +2

Query: 116  FKAVTSGXFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEEN 295
            F   T   +  +   ++VTYS    C R   + +  ++Q C   +    P   F KP E 
Sbjct: 1023 FTGTTEEIYGNINAPEAVTYSAIIYCLRVLISENIPLNQGCLLPIKVIIPDNCFLKPSET 1082

Query: 296  THII 307
              ++
Sbjct: 1083 AAVV 1086


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 276 KVHTGVSLLSSSLHDWCMTASCAQKYRVH 190
           K + G+++  +   +W + + C++KYR H
Sbjct: 155 KTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -3

Query: 526 YLYFNISIFKLSFQNYIIHEIYMIK--NNIQAANIMK---IKENILFLLMNRSHYLKSLK 362
           YLY    I+K+ FQ   ++ + + K  N I A  I      KE ++  L   S Y K+++
Sbjct: 345 YLYLFFCIYKIKFQKCDMNIVMLTKYFNEIWAVFIAHKEGEKEKVVAQLSGFSFYCKAIE 404

Query: 361 FL 356
           FL
Sbjct: 405 FL 406


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/48 (22%), Positives = 19/48 (39%)
 Frame = +2

Query: 164  SVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENTHII 307
            ++TYS    C R     D  +++ C   +    P   F  P E   ++
Sbjct: 1021 AITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVV 1068


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 342 SFFQEGFV*RTQIM*VFSSGFVKVHT 265
           SFFQEG +   ++   FS G V +HT
Sbjct: 164 SFFQEGDLLVAEVQQYFSDGSVSIHT 189


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 169  NILEGSRMHPILLRARCCHTP 231
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,310
Number of Sequences: 5004
Number of extensions: 43941
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)