Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_A07
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    96   2e-22
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 96.3 bits (229), Expect = 2e-22
 Identities = 44/87 (50%), Positives = 59/87 (67%)
 Frame = +2

Query: 158 EGHFQFNYETGNGIYAQAEGAVKNVNSEYPAIEVKGAYKYTSPDGQPIDLAYVADENGYQ 337
           +G++  N+ET NGI  Q  G  K V++E P +  +G+  YT+PDGQ + + YVADENG+Q
Sbjct: 39  DGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQ 97

Query: 338 PQGSHLPTPHPIPEAIARALAYIEAHP 418
            QGSH+PT  PIP  I RAL +  AHP
Sbjct: 98  VQGSHIPTAPPIPPEIQRALEWNAAHP 124


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +1

Query: 364 SPNSRGDRPR---SCLHRGPPPQPL 429
           SP+S  D  R   SCL  GPP  PL
Sbjct: 420 SPSSLADGARFGGSCLIHGPPLPPL 444


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +1

Query: 364 SPNSRGDRPR---SCLHRGPPPQPL 429
           SP+S  D  R   SCL  GPP  PL
Sbjct: 420 SPSSLADGARFGGSCLIHGPPLPPL 444


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 231 STQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 341
           S  N   +K+   +  LP+ DNP  S  +L     NP
Sbjct: 293 SRMNLTLAKMEKTSKPLPMVDNPE-STGNLVYIYNNP 328


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 284  PDGQP-IDLAYVADENGYQPQGSHLPTPHPIPEAIARA 394
            P+  P +DL+    + G    GS   T  P P +I+RA
Sbjct: 1369 PERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRA 1406



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 123 PSGQIQLRHHPWKATSSSTTRPATEFTPRLKVPSRTST 236
           P    Q+   P    +SST+ PAT  T      + T+T
Sbjct: 83  PGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTAT 120


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 215 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 304
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 215 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 304
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 216 VPSRTSTQNTPPSKLRVPTSTLP 284
           +P   S   TP S +  P  TLP
Sbjct: 654 LPRPISCHTTPDSFIEAPNKTLP 676


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +2

Query: 215 GAVKNVNSEYPAIEVKGAYKYTSPDGQ--PID 304
           G    V +  P  E    Y+Y  PDG   PID
Sbjct: 264 GLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,309
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)