Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_A06
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.1  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 343 THRRPAPRWSTATSHAKSTPS 281
           T  RPA  + TATSH  S P+
Sbjct: 23  TSHRPAWWFWTATSHEASAPA 43


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 331 PAPRWSTATSHAKS 290
           P+P W T T  AK+
Sbjct: 132 PSPEWDTVTPEAKN 145


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 675 VLCNHHRVPHHHMLP 719
           VL  HHR P  +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 675 VLCNHHRVPHHHMLP 719
           VL  HHR P  +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 675 VLCNHHRVPHHHMLP 719
           VL  HHR P  +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 675 VLCNHHRVPHHHMLP 719
           VL  HHR P  +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 675 VLCNHHRVPHHHMLP 719
           VL  HHR P  +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 675 VLCNHHRVPHHHMLP 719
           VL  HHR P  +++P
Sbjct: 278 VLIFHHRTPDRYVMP 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,831
Number of Sequences: 438
Number of extensions: 2876
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)