Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_P22
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.68 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -1

Query: 675 NDALNATRAAV-EEGIVPGG--GSALLRCIPVLEQL 577
           N++LNA R  + +EG++ GG  G+AL+  + + + +
Sbjct: 287 NESLNAARMLIRQEGLLCGGSSGAALIAALKIAKDI 322


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 438 FGYDALNNEYVNMIEKGIIDPT 373
           FG D LNN ++ M E  +IDP+
Sbjct: 88  FGTDKLNNPFIGMGE-FLIDPS 108


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 186 CIQDVHFMKITSCLPYHPFHPYLP 257
           CIQ V    +   L YH FH Y+P
Sbjct: 202 CIQIV--FNLRRRLGYHLFHTYIP 223


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 283 KRA*PYGWHGRYGWNGWYGRHD 218
           KR  P  W G +G + W  R +
Sbjct: 157 KRVPPTNWVGVFGGSAWSWREE 178


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 283 KRA*PYGWHGRYGWNGWYGRHD 218
           KR  P  W G +G + W  R +
Sbjct: 157 KRVPPTNWVGVFGGSAWSWREE 178


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 439 FISKILHLSNNNRTINACIFCYCHAWHPQSFLYNLYTSGLITV 567
           ++ + L       T+   I      W P ++ YN   S L T+
Sbjct: 61  WVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 259 HGRYGWNGWYGRHDV 215
           HG  G   W G HDV
Sbjct: 112 HGVIGAGHWIGDHDV 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,459
Number of Sequences: 438
Number of extensions: 3240
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)