Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_P19
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   3.3  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   4.4  
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac...    27   4.4  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   5.8  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   7.6  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   7.6  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 52  VKKINPFHHDMFPI-TTRDIRTAMH*R 129
           VKKI+PF+H +F + T R+I+   H R
Sbjct: 67  VKKIHPFNHPVFCLRTLREIKLLRHFR 93


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 535 CEGRKLNIYYRI*GQMFRLTIKCAFRKVENQR 440
           C  R  + YYR    +F  T+ CA ++VE++R
Sbjct: 340 CNDRLRSFYYRFSSWLFHQTLACA-KEVESER 370


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 267 TFALLNIPMELK*KMLKLFHCCGG*IALNMAAVCFASVSRQCRVSI 130
           T A  N+   LK K++    CCG     +   V F  +   CR+ I
Sbjct: 255 TSASENLKSNLKIKVINFLKCCGTLYRFSDDTVRFEMIQDACRILI 300


>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
           Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 104 SRVVIGNISWWNGFIFLTRLKAHMS 30
           +++V  NISW NG + +  LK H S
Sbjct: 75  TKIVHPNISWTNGEVCMDILKTHWS 99


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 7   YMIYISHCDMCAFRRVKKIN 66
           Y++Y+S+C +C   ++ K+N
Sbjct: 587 YLVYLSNCPLCLKFKLSKVN 606


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 549 LTTTGRRKQRHGTGNIHARSSDRP 620
           LT+  +   R G  NI+ ++SDRP
Sbjct: 625 LTSKAKTVTRRGNANIYKKASDRP 648


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 838 VYGLLSLLXAVRCMERLTKYY 776
           VYGL+SL  A+RC+   TK +
Sbjct: 222 VYGLISLWWAIRCICSRTKLH 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,913
Number of Sequences: 5004
Number of extensions: 66393
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)