Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_P19
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic nucleoti...    30   1.8  
Z72509-2|CAA96646.1|  520|Caenorhabditis elegans Hypothetical pr...    29   4.1  
L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.      28   9.5  

>Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   SYMIYISHCDMCAFRRVKKINPF 72
           SYMIYI HC+ C + ++  +  F
Sbjct: 361 SYMIYIIHCNSCVYYKLSALQAF 383


>Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   SYMIYISHCDMCAFRRVKKINPF 72
           SYMIYI HC+ C + ++  +  F
Sbjct: 361 SYMIYIIHCNSCVYYKLSALQAF 383


>U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 800

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   SYMIYISHCDMCAFRRVKKINPF 72
           SYMIYI HC+ C + ++  +  F
Sbjct: 361 SYMIYIIHCNSCVYYKLSALQAF 383


>Z72509-2|CAA96646.1|  520|Caenorhabditis elegans Hypothetical
           protein F32G8.2 protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = -3

Query: 616 LSDERA*-MFPVPCLCFLRPVVVNFKTPCE---GRKLNIYYRI*GQMFRLTIKCAFRKVE 449
           LSDE    M P+P   F+ PV +NF    E   G+++ +Y  +  Q F +  + AF + +
Sbjct: 438 LSDEICLCMKPIPVPDFINPVNINFMQKLEKEFGKEIKMYKCV--QSFEMGNQTAFFEYD 495

Query: 448 NQRFGSLSMIRVRVGSHIDG 389
           N + G + ++ +   + + G
Sbjct: 496 NSK-GKIRIVELSAKARVLG 514


>L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical
           protein F09G8.9 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 787 TKYYYFLCVTIF*YTYICVGILLFYID 707
           TKY+ FL V I  + ++C+  LL +I+
Sbjct: 39  TKYFDFLLVIIMTFVFLCLVYLLIWIE 65


>AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 787 TKYYYFLCVTIF*YTYICVGILLFYID 707
           TKY+ FL V I  + ++C+  LL +I+
Sbjct: 39  TKYFDFLLVIIMTFVFLCLVYLLIWIE 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,009,106
Number of Sequences: 27780
Number of extensions: 389415
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)