Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_P10
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.4  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    27   3.3  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    26   7.6  

>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 565 SLLCAFLTSLWIFSLYNLLNFFTAKLLMKPCFRYGLT-QRVFINLGVSYSDG 717
           SLL   +  L+ FS+  L  F   K  ++P + Y L  +R  I L  ++ DG
Sbjct: 33  SLLSFLIYILYTFSISGLSTFVITKYYIRPQWLYTLALRRALIKLYYNFMDG 84


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 686 NTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRD 564
           N +W+ P LKHG ++    K    L N  IH + +    +D
Sbjct: 150 NGQWITPSLKHGLLSGTMRKNL--LENGSIHEDDKGLLQKD 188


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 552 DMVKVSIV-CFPHFAMDFFIIQSSKLFYCQTVDEAMF*IWSYPT 680
           DM+K+S+V C     +    +    LF+   +D +++  WS PT
Sbjct: 218 DMLKLSLVGCVKEGIVHPVTVVDYLLFHLNRIDPSLYSKWSLPT 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,526
Number of Sequences: 5004
Number of extensions: 68728
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)