Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_P09
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...   100   2e-22
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    83   4e-17
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    27   3.0  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.2  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    25   9.1  

>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score =  100 bits (240), Expect = 2e-22
 Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
 Frame = -1

Query: 571 DEYNVTKLVESRAALKKQA-EERGIRLTYMPIIIKAASLSLSYLPILNSSLDSSC--ENL 401
           +E +++ +V  R   K +  +E G+++ +M    KA + ++  +P +N S++     + L
Sbjct: 250 NECDMSAVVALRKKYKDEILKETGVKIGFMSFFSKACTQAMKQIPAINGSIEGEGKGDTL 309

Query: 400 IYKASHNIGVAMDTPNGLVVPVIKNIQIKSILEIAQELNTLQEKGSKGQLGLNDLTGGTF 221
           +Y+   ++ +A+ TP GLV PVI+N +  S+LEI   + TL  K   G+L + D+  GTF
Sbjct: 310 VYRDFCDLSIAVATPKGLVTPVIRNAESMSLLEIESAIATLGSKARAGKLAIEDMASGTF 369

Query: 220 TISNIGIVGGTYTKPVIFPPQVAIGALGKIQVLP 119
           TISN GI G  Y  P+I  PQ A+  L  I+  P
Sbjct: 370 TISNGGIFGSLYGTPIINLPQTAVLGLHAIKERP 403



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 120 RDLILQGNVVKAHILSVSWSADHRVIDGVTMARFSNXLK 4
           R +++ G VV   ++ ++ + DHR++DG     F   +K
Sbjct: 402 RPVVINGQVVPRPMMYLALTYDHRMVDGREAVTFLRLVK 440


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 1/211 (0%)
 Frame = -1

Query: 649 VPVTGFQRAMVKSMTEAMKI-PHFVFSDEYNVTKLVESRAALKKQAEERGIRLTYMPIII 473
           +P++  ++ +   + E+  + PH+  +   N+ K++  RAAL   A+ R  +L+   ++I
Sbjct: 258 LPLSNMRKIIASRLAESKNMNPHYYVTVSVNMEKIIRLRAALNAMADGR-YKLSVNDLVI 316

Query: 472 KAASLSLSYLPILNSSLDSSCENLIYKASHNIGVAMDTPNGLVVPVIKNIQIKSILEIAQ 293
           KA + +L  +P +N++         YK + +I +A+ TP+GL+ PVI+N     + EI+ 
Sbjct: 317 KATTAALRQVPEVNAAWMGDFIRQ-YK-NVDISMAVATPSGLITPVIRNTHALGLAEIST 374

Query: 292 ELNTLQEKGSKGQLGLNDLTGGTFTISNIGIVGGTYTKPVIFPPQVAIGALGKIQVLPRF 113
                 ++    +L   +  GGTFTISN+G+        +I PPQ  I A+G        
Sbjct: 375 LAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGTTVDTVVP 434

Query: 112 DSXRERCEGSHSVGQLVCRPQSHRRRDNGAL 20
           DS  E+  G      + C   S  R  +GA+
Sbjct: 435 DSTSEK--GFKVAPIMKCTLSSDHRVVDGAM 463



 Score = 32.7 bits (71), Expect = 0.060
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 87  AHILSVSWSADHRVIDGVTMARFSNXLK 4
           A I+  + S+DHRV+DG   ARF+  LK
Sbjct: 445 APIMKCTLSSDHRVVDGAMAARFTTALK 472


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 567 SSLNTKCGIFMASVIDLTIALWKPVTGTTLSSRANSTLACAFVTGISTALTLPGNTTS 740
           S+++TK    M  +ID   + W PV  +  S++ + TL       +S   TL    T+
Sbjct: 25  SAMDTKLQTKMKEIIDQHTSTWTPVVSSVTSTQTD-TLRVTISEVVSVTATLTETFTA 81


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 648 TTLSSRANSTLACAFVTGISTALTLPGNTTSFESSELMF 764
           T  SS+ NS  A A  +  STA+T+  N+T + S+   F
Sbjct: 132 TFTSSQTNSGHASASTSIPSTAITVTANSTIYSSATSSF 170


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 611 YDGGHENSALCIQRRVQRHKTGRIACS 531
           Y GGHE +  C++ RV+ + + +I  S
Sbjct: 140 YRGGHEVNYRCVRARVELNNSWKIKLS 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,274
Number of Sequences: 5004
Number of extensions: 65486
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)