Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_P09
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.59 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.5  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   7.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 TCIFPNAPIATCGGNITGFV*VPPTIPIFDIVNVP 230
           TC+  NA   +  G +   V VPPTI  F    +P
Sbjct: 560 TCVARNAQGYSARGTLEVQVMVPPTIQQFSFTKLP 594


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 241 DLTGGTFTISNIGIVGGTYTKPV 173
           D T G  + + +G+VGGT    V
Sbjct: 2   DTTNGGGSSAGVGVVGGTIASVV 24


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 110 IKSRENLYFS*CSNCNLWREY 172
           +KS  N+Y   C+NC    +Y
Sbjct: 36  LKSHSNVYQYRCANCTYATKY 56


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 318 IWIFLITGTTNPLGVSIATPML 383
           +W+F +  T   LG+    P L
Sbjct: 486 LWVFTLACTAGTLGIIFQAPSL 507


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 421 DSSCENLIYKASHNIGVAMDTPNGLVVPVIKNIQ 320
           D +   ++YK   ++GV     + LV  ++K +Q
Sbjct: 743 DIASMEILYKPGDHLGVFACNRSELVEAILKRVQ 776


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,382
Number of Sequences: 438
Number of extensions: 5145
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)