Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_P07
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23168-10|AAC38810.2| 288|Caenorhabditis elegans Hypothetical p... 246 2e-65
AF045645-1|AAC02605.1| 301|Caenorhabditis elegans Hypothetical ... 46 3e-05
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 31 0.85
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 4.5
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ... 29 4.5
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ... 29 4.5
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 29 6.0
>U23168-10|AAC38810.2| 288|Caenorhabditis elegans Hypothetical
protein B0228.7 protein.
Length = 288
Score = 246 bits (601), Expect = 2e-65
Identities = 117/239 (48%), Positives = 154/239 (64%)
Frame = -1
Query: 828 DDPTLFENQIEKEVVTPFGRPSDVXIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWA 649
+DP + + + V TP+G+PSD +EG I V+CVLLARHGRKH + P +VN+RAN+WA
Sbjct: 13 EDPNILLDPVTVAVDTPYGKPSDDVVEGTINGVECVLLARHGRKHDIMPGNVNFRANLWA 72
Query: 648 LKQVGCTHILATTATGSLVEEYRPGDLVILDDFIDRTWGRKCTFYDNTEGGPRGVCHLPM 469
L G I+A+TA GSL E PG L+ D DRT GR+ TF+D + GVCH+
Sbjct: 73 LYSRGVDVIIASTACGSLQENVEPGHLLFPDSVFDRTTGRQSTFFDGSYDQAPGVCHIQA 132
Query: 468 RPAYCERARAALYSAAKSRGYSCHETGTAVVIQGPRFSSRAESLVHRQWGGHLVNMTTVP 289
P Y E+ R L S A+ H TG V I+GPRFS++AES+V + WG LVNMT +P
Sbjct: 133 HPTYNEKLRQVLISTAERCQLVHHRTGFGVCIEGPRFSTKAESMVFKSWGASLVNMTMMP 192
Query: 288 EVVLAKEAGLSYAAVALVTDYDCWRENEKSVSVSEVLATFSKNVKKTADVIVDAVQILG 112
E +LAKE G+ YA ALVTDYDCW+E E V+ S V+ F+ NV+K + V+AV +G
Sbjct: 193 ECILAKELGIPYATTALVTDYDCWKE-EDHVTASSVMKVFAANVEKAKTLFVEAVGEIG 250
>AF045645-1|AAC02605.1| 301|Caenorhabditis elegans Hypothetical
protein K02D7.1 protein.
Length = 301
Score = 46.4 bits (105), Expect = 3e-05
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 3/173 (1%)
Frame = -1
Query: 738 KRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVIL 559
K+V C+ H +H + + + + Q+G ++ + A G + R GDL+++
Sbjct: 94 KKVVCLQGRFHPYEHNMDLALCTLPVRV--MHQLGIKIMIVSNAAGGINAVLRHGDLMLI 151
Query: 558 DD--FIDRTWGRKCTFYDNTEGGPR-GVCHLPMRPAYCERARAALYSAAKSRGYSCHETG 388
D F+ G N PR G + + AY ++ R + + +E G
Sbjct: 152 KDHIFLPALAGFSPLVGCN---DPRFGARFVSVHDAYDKQLRQLAIDVGRRSDMTLYE-G 207
Query: 387 TAVVIQGPRFSSRAESLVHRQWGGHLVNMTTVPEVVLAKEAGLSYAAVALVTD 229
V+ GP++ S AE + + G + M+T EV +A++ G+ +L+T+
Sbjct: 208 VYVMSGGPQYESPAEVSLFKTVGADALGMSTCHEVTVARQCGIKVLGFSLITN 260
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 474 PMRPAYCERARAALYS--AAKSRGYSCHETGTAVVIQGPRFSSRAES 340
P+ E+ + LYS +K GYSCH TG +V+ + + +S
Sbjct: 340 PLNSVTFEKEQPVLYSFRTSKGVGYSCHFTGNCLVVNVEKTKGKEQS 386
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 474 PMRPAYCERARAALYS--AAKSRGYSCHETGTAVVIQGPRFSSRAES 340
P+ E+ + LYS +K GYSCH TG +V+ + + +S
Sbjct: 340 PLNSVTFEKEQPVLYSFRTSKGVGYSCHFTGNCLVVNVEKTKGKEQS 386
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
E01G6.1 protein.
Length = 1391
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -1
Query: 516 YDNTEGGPRGVCHLPMRPAYCERARAALYSAAKSRGYSCHETGTAVVIQGP 364
Y + +G P CH+ + P +YS K Y C TAV + P
Sbjct: 949 YISRDGFPP-TCHMQLSPCPTTAPYVCIYSPEKQDSYCCAPIDTAVHVVNP 998
>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
protein 6, isoform b protein.
Length = 1227
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 437 HCTARPSLGGTRAMKPALRLSYRDPDSQVAPKAWSIDSGVAIL 309
HCTAR SLG R+ L+ S+ DP +S+ +G A L
Sbjct: 250 HCTARNSLGEVRSPPILLKPSFIDPFRPHRLDVYSLATGGAKL 292
>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
protein 6, isoform d protein.
Length = 1196
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 437 HCTARPSLGGTRAMKPALRLSYRDPDSQVAPKAWSIDSGVAIL 309
HCTAR SLG R+ L+ S+ DP +S+ +G A L
Sbjct: 219 HCTARNSLGEVRSPPILLKPSFIDPFRPHRLDVYSLATGGAKL 261
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 261 LSYAAVALVTDYDCWRENEKSVSVSEVLATFSKNVKKTADVIVDA 127
+S+ +V D+ +N+K S+ + ATF K+T + + A
Sbjct: 319 MSHLSVTKAKDFKATNKNKKKNSICDTRATFPSETKETISITLPA 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,935,574
Number of Sequences: 27780
Number of extensions: 461648
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -