Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_P03
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 1.0
06_02_0069 - 11126235-11127538,11128361-11128421 29 4.1
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800... 28 5.5
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 28 5.5
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 28 5.5
04_03_0799 - 19805190-19805749,19806316-19806403 28 5.5
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468... 28 5.5
12_02_0204 - 15502331-15502459,15502875-15503129 28 7.2
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 28 7.2
03_01_0053 + 457622-458191,458328-458393,458734-458978,459393-45... 28 7.2
11_01_0409 - 3096372-3097052,3097324-3098652 27 9.6
08_02_0883 + 22229278-22230009 27 9.6
08_02_0707 - 20212190-20214592 27 9.6
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648... 27 9.6
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 27 9.6
02_04_0607 - 24302582-24303075,24303150-24304197 27 9.6
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 27 9.6
01_03_0155 + 13274537-13274741,13274827-13274864,13274909-132749... 27 9.6
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 371 HKSQHESRDGGAVHGSYSLVEPD-GSVRKVDYTAD 270
H+S HE+R G + SL+EPD G+ K+ AD
Sbjct: 2684 HESLHENRHGAKDEQTLSLIEPDTGNAEKLPNEAD 2718
>06_02_0069 - 11126235-11127538,11128361-11128421
Length = 454
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 446 AHGHDTY--AHPKYDYAYSVADPHTG-DHKSQHESRDGGAV 333
AHGHD A K+ Y Y+ +P G +H + H D V
Sbjct: 362 AHGHDHVHLAKKKFSYYYTFGNPEDGHEHANHHGGYDNHIV 402
>11_06_0234 +
21574380-21575197,21576131-21576190,21578320-21580053,
21581859-21582006
Length = 919
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 132 GPWTPWSPSLLNN*HQFMFDMIVTDD 55
GPWT PSLL + + ++ +IV DD
Sbjct: 275 GPWTTVPPSLLRHCFEVIWYLIVIDD 300
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 468 DDGGSVDYR-GGVDEWSCMDNGCGIMSR--GVMSR--GIVCRGIMTDDALGRNCR 617
DDGG D R GG D + M+ + SR G+ R +VCRG D G CR
Sbjct: 509 DDGGGRDERGGGRDAVTRMNTIVDLFSRATGIWFRQIDVVCRGGAALDDAGAVCR 563
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 524 QWVRHNEQGRNEPRHSVPGHHDGRCS 601
Q RHNE G +E PG+H CS
Sbjct: 454 QNARHNEDGVDESSDGGPGYHVNACS 479
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 368 CGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKP 463
C H C P+ K H C GHG KP
Sbjct: 122 CYHCCPAPPKPKPKPCECTHHCGGHGGGCNKP 153
>03_05_0603 -
26046145-26046273,26046400-26046459,26046820-26046895,
26046988-26047109,26047286-26047360,26047466-26047536,
26048102-26048129,26048625-26048738
Length = 224
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 9 Y*FHHHYLHINNTFISHPSRSYQT*IDASCLVMMETM 119
Y F+H YLH + H Y T I S L +M TM
Sbjct: 171 YVFYHIYLHYSQVMQMHAFGYYLTFIVPSVLFVMNTM 207
>12_02_0204 - 15502331-15502459,15502875-15503129
Length = 127
Score = 27.9 bits (59), Expect = 7.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 328 PCTAPPSRLSCW 363
PC+ PP+RL CW
Sbjct: 54 PCSPPPARLHCW 65
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 344 GGAVHGSYSLVEPDGSVRKVDYTADDHHGFNA 249
GG + G V PDG+ + + AD HG A
Sbjct: 93 GGRIEGQGVFVGPDGATYRGAWAADRRHGVGA 124
>03_01_0053 +
457622-458191,458328-458393,458734-458978,459393-459861
Length = 449
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 144 LCFLGPWTPWSPSLLNN*HQFMFDMIVTDD 55
LC LG W PWSP L+ + +I+ DD
Sbjct: 331 LCPLG-WAPWSPRLVESVLLGCIPVIIADD 359
>11_01_0409 - 3096372-3097052,3097324-3098652
Length = 669
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 395 VADPHTGDHKSQHESRDGGAVHGSYSLVEPDGS-VRKVDYTADDHH 261
V + H G H H+S+ + G Y + DGS + +VD +D H
Sbjct: 428 VYNHHQGHHTVIHDSQRNLVLTGPYRAISADGSFLIEVDTNNEDVH 473
>08_02_0883 + 22229278-22230009
Length = 243
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = +3
Query: 471 DGGSVDYRGGVD--EWSCMD 524
DGG+ DY GG D +WS MD
Sbjct: 161 DGGAADYDGGDDVIDWSFMD 180
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +2
Query: 326 YHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGH 442
+H HHH + GSC H HS GH
Sbjct: 484 FHEEHHH--AHGGSCSHSHSHSHSHSHSHSHSHSHVHGH 520
>03_02_0213 +
6480521-6480644,6482347-6482499,6482582-6482980,
6483158-6483234,6483990-6485312
Length = 691
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -2
Query: 410 DYAYSVADPHTGDHKSQHESRDGGAVHGSYSLVEPDGSVRK--VDYTADDHHGF-NAVVH 240
+YA S D G KSQ + RD G +P + +K V ++ + H F NAV H
Sbjct: 162 EYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNAVNH 221
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 326 YHVRHHHRGSRAGSCGHR 379
+H HHH+ ++ GSC H+
Sbjct: 169 HHHHHHHQLTKEGSCNHQ 186
>02_04_0607 - 24302582-24303075,24303150-24304197
Length = 513
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 275 RCSLLYVRNHQARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRI 415
R L + + H G VRHHHRG AG+ G + G + H R+
Sbjct: 72 RAGLRFQQLHHHHHGH-VDVRHHHRGG-AGAGGAQQGPFQWADHPRL 116
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 293 VRNHQARRGSSYHVRHHHRGSRAGS 367
V +H G +H HHH GS A +
Sbjct: 564 VDHHHHHHGHHHHGHHHHEGSSAAA 588
>01_03_0155 +
13274537-13274741,13274827-13274864,13274909-13274968,
13275117-13275176,13277072-13277146,13277233-13277346
Length = 183
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 314 RGSSYHVRHHHRGSRAGSCG 373
+GSS+H HHH G G G
Sbjct: 30 QGSSHHHHHHHSGGGGGGGG 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,300
Number of Sequences: 37544
Number of extensions: 294009
Number of successful extensions: 1223
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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