Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O16
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    40   3e-04
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    35   0.017
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    33   0.052
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    31   0.28 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   7.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.8  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = -2

Query: 847 GTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 749
           G  +FFKGA +N+LRG  GA VL +YD+++ ++
Sbjct: 285 GARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +3

Query: 3   LYXFFRQNSNTHSLRLTNLFPSMRSCLAAPQRFSIXXKQ*CQLLGSAHQFNKSQMSALHN 182
           LY FF    +T  ++   +   M       Q+      Q  QL G AH+FN+   + L N
Sbjct: 49  LYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTDLRN 108

Query: 183 QLQNHMILHLIA 218
            ++ H  L  +A
Sbjct: 109 SIKQHQQLKELA 120


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 25/86 (29%), Positives = 42/86 (48%)
 Frame = -2

Query: 517 QLLSYYIIYC*FKMKND*FFLCDIT*FGLRLLCN*PHFSLVPEAKAELKIVQNFILKEVF 338
           QLL YY IY  FK+  D   L +     ++ + +  HF L+ +    L+I  N+  +E F
Sbjct: 550 QLLEYYDIYLKFKLLADWRLLTNPV-LQIQEISDYCHFKLLKKVNRNLQIKTNYPTQE-F 607

Query: 337 NVLSILNLSFVGIENFHFFLHSGSEF 260
           ++L    +  + I    +FLH  S +
Sbjct: 608 HLLR-PTIKILQISKHEYFLHFSSSY 632


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 409 HFSLVPEAKAELKIVQNFILKEVFNVLSILNLSFVGIENFHFFLHSGSEFDIIM-*CIFD 233
           + SL P+ +A L       L+E+    ++L + F+G   FH  L + +  +I++  C  +
Sbjct: 101 YVSLSPQVRANLAAYYGLSLQEI---QAVLEMVFIGKLGFHAILDTNASREIVLQQCAQE 157

Query: 232 FCTHY 218
           FC  +
Sbjct: 158 FCNSW 162


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 527 FDISITFILYNLLLIQNEK*LV-FFM*HHIVW 435
           F  S +FILYNLL+  +      FF  H +VW
Sbjct: 849 FRFSFSFILYNLLISTSTVFFAGFFRRHLMVW 880


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 774  KTSTKAPPVPLRTLEKAPL 830
            K S+KAPPVPL + +  P+
Sbjct: 1016 KLSSKAPPVPLPSADAPPI 1034


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,209
Number of Sequences: 5004
Number of extensions: 61718
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)