Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_O16
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 46 5e-05
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 34 0.13
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309 33 0.38
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14... 31 1.5
12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550... 29 4.7
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 6.2
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 28 8.3
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 28 8.3
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = -2
Query: 847 GTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 749
G +F++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 304 GIKSFYRGALSNMFRSTGAAAILVLYDEVKKFM 336
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 847 GTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 749
G + FKGA +N+LR GA VL YD+++ V+
Sbjct: 338 GAKSLFKGAGANILRAVAGAGVLAGYDKLQVVV 370
>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
Length = 382
Score = 32.7 bits (71), Expect = 0.38
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 853 DRGTSAFFKGAFSNVLRGTGGAFVLVLYDEIK 758
+ G + FKGA +N+LR GA VL YD+++
Sbjct: 338 NEGAKSLFKGAGANILRAIAGAGVLSGYDQLQ 369
>11_01_0021 -
143576-143932,144434-144667,144988-145066,145138-145253,
145717-145861,146048-146465,147206-147869
Length = 670
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 171 ALHNQLQNHMILHLIA*CVQKSKIHYIIMSNSLPLCKKK 287
A HN L NH++ H + +K H+ ++LP K K
Sbjct: 87 AFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAKLK 125
>12_01_0650 +
5500662-5501206,5502485-5502563,5503100-5503308,
5504396-5505146
Length = 527
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 400 LVPEAKAELKIVQNFILKEVFNVLSILNLSFVGIENFHFFLHSGSEFDIIM*CIFDFCT 224
L+P+ E K Q+ + +E LS + + + NFHF + G E+ ++ I+D T
Sbjct: 385 LIPQTTGEAKRTQD-VGEEYLIQLSRKSFVDLKLRNFHFGRNEGHEYYVMHDLIYDLAT 442
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +3
Query: 150 FNKSQMSALHNQLQNHMILHLIA*CVQKS---KIHYIIMSNSLPLCKKKWKF 296
FN+++++ LH +L+ H++ +I V+KS KI I+ + PL K+ +K+
Sbjct: 799 FNETELANLHKELRPHILRRVIK-DVEKSLPPKIERILRVDMSPLQKQYYKW 849
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 847 GTSAFFKGAFSNVLRGTGGAFVLVLYDEIKK 755
G F+G +N+L G GA VL YD++ +
Sbjct: 281 GFFTLFRGVGANILSGMAGAGVLAGYDQLHR 311
>02_04_0485 +
23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +1
Query: 1 FCMXFSGKTQTRTLFGSQIF----FPPCALAWQLHSA-FQLXXNNNVNS 132
F F KT R +F + FP C L W LH A F+L N+ + +
Sbjct: 315 FNQSFMHKTVLRAMFVDKFLRWKTFPLCCLRWILHYAVFELPPNSGIET 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,271,081
Number of Sequences: 37544
Number of extensions: 350926
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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