Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O14
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    27   3.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   5.0  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.0  
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    26   6.6  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    26   6.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   6.6  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   6.6  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   8.7  

>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 263 AESFSSRHLNLKLDEIQVQVPTWVLQAKYELAYQ 162
           AE    R L L+++++QV+V  +  + +++ A+Q
Sbjct: 72  AEQKRDRELRLRIEKVQVEVEKYQSKLRFDKAFQ 105


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 449 GLTDSPAGLLAYILEKFSTWTNPDLRSKEDGGLSYRWTKDQLIDNL 312
           G T+S   ++ Y+L+K       DLR KE    S  W+ D + D L
Sbjct: 740 GSTNSKERIIEYLLDKL------DLRKKEIAAESTLWSNDGIDDKL 779


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 551 LANRLYPLSEKYSTLLEELGYLHIQATK-PDTVGIGLTDSPAGLLAYILEK 402
           L  RL+PL+E Y   +     L+ QATK PD V  G   S   L A+I++K
Sbjct: 371 LMKRLFPLAELYYKRMATDVPLNFQATKAPDFVPEGPWKSHP-LPAFIVDK 420


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 491 YLHIQATKPDTVGIGLTDSPAGLLAYILEKFSTWTNPDLRSKED 360
           YL+      + V  G + S A LL ++    +  T+PD+ S ED
Sbjct: 104 YLYQNGEIVEEVPFGASTSEASLLDFVETHLNPDTDPDIPSDED 147


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 550 SSGSTIRDGNKAPTNSRNVAAGLRVSAMLEWK 645
           S G+T+  GN  P+ + N  AGL       W+
Sbjct: 52  SKGNTVPVGNSRPSKASNWLAGLMEDKNQRWR 83


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 440 DSPAGLLAYILEKFSTWTNPDLRSKEDGGLSYRWTKDQLIDNL 312
           D   G  ++I EKF  +  PD  +  DGG  Y   K    +NL
Sbjct: 43  DGGQGCSSFIKEKFRPYGPPDGGNGGDGGSVYVAVKPGSFNNL 85


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 569 LIVEPELANRLYPLSEKYSTLLEELGYLHIQATK 468
           L+    L+  +  L   YST++EE  YL+++ T+
Sbjct: 547 LLRRDALSTTVSKLQNAYSTVMEETAYLNVKNTE 580


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 386 NPDLRSKEDGGLSYRWTKDQLIDNLMLYWSTKS 288
           NP L   E    +Y++ +DQL  N+ L  +TKS
Sbjct: 62  NPGLLEAEGLERTYKFRQDQLAPNVALETATKS 94


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 344 RWTKDQLIDNLMLYWSTKSIVTSMRLYAE 258
           +W  DQ I    LY + + +V  +R Y E
Sbjct: 291 KWANDQRIGQEELYEAAEKVVLELRSYTE 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,496
Number of Sequences: 5004
Number of extensions: 65645
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)