Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O14
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    98   7e-23
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.0  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 98.3 bits (234), Expect = 7e-23
 Identities = 46/85 (54%), Positives = 59/85 (69%)
 Frame = -3

Query: 713 QGGDWGALIGSXMXTFFPKEIIGFHSNMALTLSPAATFLEFVGALFPSLIVEPELANRLY 534
           QGGDWG++I S M   FP++IIG H+NM  +L+ +  F  FVG  FPSLI   E  ++ +
Sbjct: 1   QGGDWGSVIASDMAVLFPEKIIGLHNNMCTSLNLSNLFWLFVGTYFPSLIGANEHYSKFF 60

Query: 533 PLSEKYSTLLEELGYLHIQATKPDT 459
           P+SE  S L+EE GY HIQATKPDT
Sbjct: 61  PVSEILSFLIEESGYFHIQATKPDT 85


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +3

Query: 597 KERRRWTKSERHVGVEADYFL-----REESXHXATDESTPIT 707
           +E RR    E  V V  D F      R+ES   +TD STP T
Sbjct: 177 QEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPAT 218


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 638 SNMALTLSPAATFLEFVGALFPSLIVEPELANRLYPLSEKYST 510
           S M  +LS     L F+  +   L+V PE+      +S  Y+T
Sbjct: 147 SMMIESLSHTTQDLVFIWNMTDPLVVNPEIELPQLDISNNYTT 189


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 317 NLMLYWSTKSIVTSMRLYAESFSSRHLNLKLDEIQVQVPTWV 192
           NLM+++       S+ L A S     +   L E+ V  PTW+
Sbjct: 305 NLMVFYEK-----SLALAAFSLMLTSILRYLQELHVDAPTWI 341



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 599 LEFVGALFPSLIVEPELANRLYPLSEKYSTLLEELGYLHIQA 474
           + F G   P+L+V  E +  L   S   +++L  L  LH+ A
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDA 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,987
Number of Sequences: 438
Number of extensions: 4127
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)