Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O11
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    33   0.027
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   0.77 
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.8  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    27   2.3  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   5.4  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.2  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   9.5  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 451 PVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRE---RGRPKKKWMDCVK 296
           P+T  L+S  LG +G  +++NE  + K  + + +E  R+   R   +K W+ C K
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWIICGK 360


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 451 VPLSDFL*RIHSVFYPFSLLHTSIATFASLLHAIAFHPPLSLSNKHITTAI 603
           V +SD + RI+S F  FSL H  +   +S L    +   LS+++  I T++
Sbjct: 470 VAISDIVTRINSAFGDFSLDHLPVTILSSDLSYPQYLALLSVADAFIVTSL 520


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 331 LFL*IFPHS*LTLS*QPHFHSVSSHVHTIPNVHSSASLSQVPLSDFL*RIHSVFYPFS 504
           LF  ++P   +TL   P      S + TI +V+S  ++        L R+H  FY  S
Sbjct: 84  LFYTLYPFQSITLPLMPFLEKTESSILTISHVYSPPTIITFDGFKRLLRMHVPFYTLS 141


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 364 LTMNVERFRERGRPKKKWMD 305
           LT+ +ERF +R R ++KW D
Sbjct: 70  LTVRMERFIQRYRSRRKWSD 89


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 503 RYSTHPSQHSHLCCMQSPFIRHFRCPT 583
           ++ T  S+H+++ C   P++  F C T
Sbjct: 12  QFLTWNSKHNYIVCCSGPYLLGFSCST 38


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +2

Query: 221 ATCFLLPYSSIIYHFFAHSPPTHIV--FHTI 307
           A CFLLP   IIY  F     T +    HT+
Sbjct: 167 AVCFLLPVGVIIYTMFGGIKATFLTDYIHTV 197


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 391 SVSSHVHTIPNVHSSASLSQVPLSDFL*RIHSVFYPFSLLH---TSIATFASLLHAIAFH 561
           S+ S + TIP+ +S++  SQ PL+      HS  +P    H    S    ASL +A A  
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLT------HSYVHPGPQSHKYSLSSGPPASLYNANALT 352

Query: 562 PPLSLS 579
           P  S S
Sbjct: 353 PEESSS 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,628
Number of Sequences: 5004
Number of extensions: 52432
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)