Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O10
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   2.3  
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    26   5.3  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    26   7.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   9.3  

>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 612 HEIETDPKKKTFTGNNLESQLTKWSLKKIIPQKKLQEITLSFSSPSHRDLYVS 770
           H++E    + T   +     L + SL+K +PQ+ LQ   LSF  P   D Y+S
Sbjct: 518 HDVEGQFAELTENLSRRVILLNEQSLRKFLPQRILQGTILSF-DPLPPDTYLS 569


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 627 DPKKKTFTGNNLESQLTKW-SLKKI 698
           D K K    +NLE+Q  KW SLKKI
Sbjct: 4   DQKPKVLEVSNLENQDAKWTSLKKI 28


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 600 IWRYHEIETDPKKKTFTGNNLESQLTKWSLKKIIPQKKLQEITL 731
           ++ ++ I  DP  +TF  +   S L KW    ++ +  L + TL
Sbjct: 12  LFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTL 55


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 654 NNLESQLTKWSLKKIIPQKKLQEITLSFSS 743
           N L SQ+ +  LK     KK QE+ +SF +
Sbjct: 590 NELNSQIDELKLKLNEANKKYQELAISFEN 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,749
Number of Sequences: 5004
Number of extensions: 46263
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)