Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O06
         (493 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   187   2e-47
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   187   2e-47
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   187   2e-47
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   187   2e-47
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...   126   6e-29
AB029009-1|BAA83038.1|  902|Homo sapiens KIAA1086 protein protein.     31   2.2  

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  187 bits (456), Expect = 2e-47
 Identities = 91/110 (82%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
 Frame = -3

Query: 347 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKGPVRMPTKILRI 171
           KD  K   E    IHRIRITLTSRNV+SLE+VCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 170 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 21
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  187 bits (456), Expect = 2e-47
 Identities = 91/110 (82%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
 Frame = -3

Query: 347 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKGPVRMPTKILRI 171
           KD  K   E    IHRIRITLTSRNV+SLE+VCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 170 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 21
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  187 bits (456), Expect = 2e-47
 Identities = 91/110 (82%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
 Frame = -3

Query: 347 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKGPVRMPTKILRI 171
           KD  K   E    IHRIRITLTSRNV+SLE+VCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 170 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 21
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  187 bits (456), Expect = 2e-47
 Identities = 91/110 (82%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
 Frame = -3

Query: 347 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKGPVRMPTKILRI 171
           KD  K   E    IHRIRITLTSRNV+SLE+VCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 170 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVE 21
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVE
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score =  126 bits (303), Expect = 6e-29
 Identities = 57/60 (95%), Positives = 59/60 (98%)
 Frame = -3

Query: 209 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 30
           KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60


>AB029009-1|BAA83038.1|  902|Homo sapiens KIAA1086 protein protein.
          Length = 902

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 303 HQDHSYFTQCALARGGLC*PNQWSQETEAACKGPSPHANQDPA 175
           ++D  YF   AL  G +   +     T+ AC  PSPH +   A
Sbjct: 65  YEDRPYFQSAALQSGRMTAADSGQPGTQEACGQPSPHGSHSHA 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,118,521
Number of Sequences: 237096
Number of extensions: 1797506
Number of successful extensions: 3593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3593
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)