Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O04
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   2.3  
SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|c...    26   7.0  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.3  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   9.3  

>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 222 HIRKESKATKTLMKHGTDETVSPPVTDLSHLPVHSTRRSAHYQESKISR 368
           H RKE + T++  +HG+     P  T LS    HST      ++ +  R
Sbjct: 135 HRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYER 183


>SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 391 GERNAMNEEVLHTTLQNYCFIDSRSQVTTTSNYIDMSNSNKNRIHII 531
           G R  + + + +   QN C   S+ +V  T  +++M+ S K+  H+I
Sbjct: 27  GHRFVIRDLLRNGFRQNNCSFYSKEKVENTVIFLEMAASRKSVEHLI 73


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 415 LHSLRFSLPPFLIHHSLDI 359
           LH  +F + P  +HH LDI
Sbjct: 580 LHEEKFRIEPVPVHHQLDI 598


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 749 RRLSKRKEYDRVTRFVGSNQAFKNFEE 669
           RRL + +EY  +T+ + +N AF   EE
Sbjct: 475 RRLWRAREYSVLTKGMTANNAFSKVEE 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,401
Number of Sequences: 5004
Number of extensions: 51670
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)