Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O04
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.4  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   7.4  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.8  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 451 IDSRSQVTTTSNYIDMSNSNKNRIHIIKIIYVTCKY 558
           I S S     SNY + +N+N N  +  K+ Y    Y
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 451 IDSRSQVTTTSNYIDMSNSNKNRIHIIKIIYVTCKY 558
           I S S     SNY + +N+N N  +  K+ Y    Y
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 451 IDSRSQVTTTSNYIDMSNSNKNRIHIIKIIYVTCKY 558
           I S S     SNY + +N+N N  +  K+ Y    Y
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 451 IDSRSQVTTTSNYIDMSNSNKNRIHIIKIIYVTCKY 558
           I S S     SNY + +N+N N  +  K+ Y    Y
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINY 117


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 416 KYYIRRYKTIVLLIVA 463
           KY++ R+K IV L+ A
Sbjct: 104 KYWVERHKHIVRLVTA 119


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 431 RYKTIVLLIVAHKLPLHLTI*ICXTQIK 514
           ++KT   L V  +L L L++ +  TQ+K
Sbjct: 26  KFKTTRYLSVCERLNLALSLSLTETQVK 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,325
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)