Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_O02
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 44 3e-05
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 30 0.46
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 4.3
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 7.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.8
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 9.8
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 9.8
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 43.6 bits (98), Expect = 3e-05
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 9/145 (6%)
Frame = -3
Query: 750 RLXAAGADIKEMXXNTYSSNTXQ---GFLREWE---DISNCGKPIIAAVNGFALGGGCEL 589
R ++G DIK + + F +E+ ++ KP++A +NG +GGG L
Sbjct: 111 RSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGL 170
Query: 588 AMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLPRYVGKSKAMEIVLTGNFFDAHE 418
AM A E F PE IG + RLP Y G + LT ++
Sbjct: 171 AMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFG----TYLGLTSQIVKGYD 226
Query: 417 AEKMGLVSKVFPVEKLLEETIKLAE 343
+ G+ + P +LAE
Sbjct: 227 CLRTGIATHFVPKHMFPHLEDRLAE 251
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.9 bits (64), Expect = 0.46
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 554 RRNSVNPRSTLAPSPEPEAPSVFPDTLASRK 462
RR+S + RS + EPE PS+ + +AS K
Sbjct: 10 RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 560 AKRRNSVNPRSTLAPSPEPEAPSVFP 483
AK + V P AP EP PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 563 PAKRRNSVNPRSTLAPSPEPEAP 495
P K +N+++ + L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176
>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 10 IKDFARFFLSIYKSYKQYYTSHLIS 84
+ D +S+YKSYK Y T+ ++S
Sbjct: 25 VVDVTMINISLYKSYKSYPTNKVLS 49
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 575 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 664
S+S SS P A+PLTA +GF + S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 9.8
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -1
Query: 590 WQCCAISSMPAKRRNSVNPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLMLMKPR 411
+Q + S P RN++ P +T +PSV P+T+ S + S +K +
Sbjct: 357 FQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQ 416
Query: 410 KWVLSVK 390
V S K
Sbjct: 417 SHVPSAK 423
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 9.8
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Frame = -3
Query: 621 NGF-ALG---GGC---ELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYV 475
NGF ALG GG LA CD G P I TIPG T + + V
Sbjct: 98 NGFYALGLSQGGLFLRALAQTCDAAKIRSLITLGSPHSGINTIPGCSPTNLICKAV 153
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 535 RDQHWHHPRSRRHPASSQIRWQVESNGDRV 446
RD + RSR+ ++ R++ E NGD+V
Sbjct: 56 RDSEYFRGRSRKFQIQAEGRFKKEYNGDQV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,593,953
Number of Sequences: 5004
Number of extensions: 80719
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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