Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O01
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0174 - 6202334-6204922                                           30   0.64 
04_03_0801 - 19828175-19828770,19828913-19828994                       28   3.4  
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    27   4.5  
02_05_0600 - 30273080-30274692,30274709-30274949                       27   7.8  

>10_02_0174 - 6202334-6204922
          Length = 862

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 38  PTCPRSIYIYLSNVHTRGVNKGVSTRIGTVPPSQCLDAWIYNKND 172
           P    ++Y  +  +   GV +GVS R+ T  P   L  WI+ + D
Sbjct: 233 PAMVANLYADMDRIVASGVMEGVSGRVETWGPLLLLQVWIWERFD 277


>04_03_0801 - 19828175-19828770,19828913-19828994
          Length = 225

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 125 PSRCVWTPPC*PPSCG 78
           P  C W P C PP CG
Sbjct: 194 PPPCPWQPVCPPPPCG 209


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 173 CRSCYISTRQDTGRAGPSRCVWTPPC*PPS--CGRYLSKCKLNAGRSA 36
           CR C+ S  +D G   P R    P   PP+    R+ SK  ++  R A
Sbjct: 39  CRQCFRSNAKDIGFIKPPRAGLDPEATPPASIASRFESKFPVDFMRDA 86


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 173 CRSCYISTRQDTGRAGPSRCVWTP 102
           CR C+ ST   TGR    R V+ P
Sbjct: 263 CRRCWASTSSPTGRLDRRRLVFPP 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,508,803
Number of Sequences: 37544
Number of extensions: 224843
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)