Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O01
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z46787-4|CAA86742.1|  166|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   7.1  
AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    26   9.4  

>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
           protein ZK897.1 protein.
          Length = 1396

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 414 TSLYVQSYSGLXFVGSISPCCVECHLMFILF*FTFLYSQLNI 289
           +S ++ SYS   F+ ++  CC   HL+F+ F F+F     NI
Sbjct: 5   SSFFMSSYS--FFLSAVLFCCFLKHLLFMFF-FSFAVFVWNI 43


>Z46787-4|CAA86742.1|  166|Caenorhabditis elegans Hypothetical
           protein C16C10.4 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 29  DRTPTCPRSIYIYLSNVHTRGVNKGVSTRIGTVPPSQC-LDAWI 157
           DR   CP  + ++++N     +++  S   G+VPPS+  +  W+
Sbjct: 19  DREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWM 62


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 14   SPSTADRTPTCPRSIYIYLSNVHTRGVNKGVSTRIGTVPPSQCLDAWIYN 163
            +PST+   PT    +   ++   TR     V+T   TV P QC   W+YN
Sbjct: 1212 APSTSTAVPTTTVPVTTTIATT-TR-----VTTVRPTVGPCQCTGRWVYN 1255


>AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 179 LKCRSCYISTRQDTGRAGPSRCVWTPPC*PPSCGRYLSKCKLNAG 45
           L C++C   T   + +A    C  TP   P  C     KC +NAG
Sbjct: 191 LPCQTCASFTDPMSEKA---TCTATPGMTPGDCATLAVKCMINAG 232


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 179 LKCRSCYISTRQDTGRAGPSRCVWTPPC*PPSCGRYLSKCKLNAG 45
           L C++C   T   + +A    C  TP   P  C     KC +NAG
Sbjct: 104 LPCQTCAPFTDPMSEKA---TCTATPGMTPGDCATLAVKCMINAG 145


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 196 APTMHNTGMFLQSIIRIIITVHYFFYYNSCL 288
           A  ++    ++Q+ +R++   HY+ Y N CL
Sbjct: 111 ANAVYQLDKYIQTRVRVLHNGHYYSYKNLCL 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,556
Number of Sequences: 27780
Number of extensions: 183424
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)