Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_O01
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   5.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   9.6  

>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 14  SPSTADRTPTCPRSIYIYLSNVHTRGV 94
           SP + DR+ T   S  I LSN    G+
Sbjct: 84  SPDSRDRSNTSNTSKTIILSNKGPEGI 110


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 14  SPSTADRTPTCPRSIYIYLSNVHTRGV 94
           SP + DR+ T   S  + LSN    G+
Sbjct: 84  SPDSRDRSNTSNTSKTVILSNKGPEGI 110


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 339 SDTQHNKGRWIRQI 380
           S + HN   W+RQ+
Sbjct: 340 SPSTHNMSPWVRQV 353


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -3

Query: 86  SCGRYLSKCKLNAGRSACG 30
           S G  L  C L  G   CG
Sbjct: 109 SAGSLLHICMLELGHEVCG 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,651
Number of Sequences: 438
Number of extensions: 2396
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)