Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N19
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    33   0.027
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   0.58 
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.3  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   3.1  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   3.1  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   5.4  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   5.4  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   7.2  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   9.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 450 HFHDTYGQGLSNLLAGLEFGIKTVDSSISGLG 355
           HFH+  G  ++N    LE G   +D+SI G+G
Sbjct: 224 HFHNDTGMAIANAYCALEAGATHIDTSILGIG 255


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 327 GNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGK 211
           G     DLVY L  L +  +  LV+++ A R ++N+L K
Sbjct: 382 GRDEAHDLVYRLCHLSIQENKPLVELLLAERQVTNYLSK 420


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 534 MNSAGRSGSVRRLLHEILTVAKPEQLALHFH 442
           +N A  S  +R L HEI  +  PE + +  H
Sbjct: 176 INKAAESWGIRCLRHEIRDIRPPESVVMAMH 206


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 353 PPSPEMEESTVLIPNSRPASK 415
           PPSP+++ S  + P S+P S+
Sbjct: 165 PPSPKVDTSNTVSPGSKPISE 185


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 47  WNKYLITIIECLFLSLN-RYCNINYLYEQLQDA 142
           + +  + +I   F+S +  YC I YLY  L DA
Sbjct: 35  FTRVFLVLISLYFMSWHPNYCTIVYLYSSLLDA 67


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 362 PEMEESTVLIPNSRPASKLESP 427
           PEM+  +   P++RPAS  E+P
Sbjct: 101 PEMKVGSPYTPSTRPASHTEAP 122


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  QSKYLLSCVWNKYLITIIECLFLSLNR 100
           QSK+LL   W   L T+I+   LSL++
Sbjct: 358 QSKFLLIIAWKSNLNTVIQKCNLSLDQ 384


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 218 RKLEMYRPASIIFTRSTSVLTPRPYRK*TRSSVARLPLAPRAYGHPPSPEMEEST 382
           RKL + R AS++     ++  P  YR  +     R PL   +   P S E E  T
Sbjct: 304 RKLGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDT 358


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 532 EFGRPIRLRPPTSS*NPHCRKTGTTS 455
           E+ R  R+ PP  +  PH  +T T S
Sbjct: 477 EWRRRYRVAPPAENEKPHTSRTNTAS 502


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 254 FTRSTSVLTPRPYRK*TRSSVARLPLAPRAYGHPPSPEMEESTVLIPN 397
           F+  + + TP P  +  R+   R P +   Y  PPS     ST++ PN
Sbjct: 12  FSYDSILSTPTPSAR--RTIGPRAPKSKTTYHKPPSSIESVSTLIQPN 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,387
Number of Sequences: 5004
Number of extensions: 45517
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)