Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_N19
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171... 141 3e-34
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 141 4e-34
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 138 3e-33
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751... 31 0.58
03_03_0041 - 14007687-14009381 29 3.1
05_05_0366 + 24442227-24442472,24442549-24442734,24442818-244429... 28 4.1
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 27 7.2
07_03_1603 + 28080561-28080706,28080752-28080834,28082055-280820... 27 7.2
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509... 27 7.2
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662... 27 7.2
01_06_0073 + 26191822-26192116,26192227-26192445,26193655-261938... 27 9.5
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 27 9.5
>11_01_0220 +
1717861-1717979,1718149-1718281,1718544-1718723,
1719046-1719126,1719259-1719422,1719518-1719654,
1719900-1720015,1720134-1720367
Length = 387
Score = 141 bits (342), Expect = 3e-34
Identities = 61/114 (53%), Positives = 86/114 (75%)
Frame = -1
Query: 522 GRSGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGLGGCPY 343
G GS+ +L +++ ++LA+HFHDTYGQ L+N+L L+ GI VDSS+SGLGGCPY
Sbjct: 269 GTPGSILAMLEAVMSFVPVDKLAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPY 328
Query: 342 ARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPTESKVNRVI 181
A+GA+GN+ATED+VY L+GLG+ T+VDL K+++AG YIS LG+ + SK +
Sbjct: 329 AKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTAL 382
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 141 bits (341), Expect = 4e-34
Identities = 61/114 (53%), Positives = 86/114 (75%)
Frame = -1
Query: 522 GRSGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGLGGCPY 343
G GSV +L +++ +++A+HFHDTYGQ L+N+L L+ GI VDSS+SGLGGCPY
Sbjct: 269 GTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPY 328
Query: 342 ARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPTESKVNRVI 181
A+GA+GN+ATED+VY L+GLG+ T+VDL K+++AG YIS LG+ + SK +
Sbjct: 329 AKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTAL 382
>01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 138 bits (334), Expect = 3e-33
Identities = 61/109 (55%), Positives = 83/109 (76%)
Frame = -1
Query: 522 GRSGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGLGGCPY 343
G G+V +L ++ E+LA+HFHDTYGQ LSN+L L+ G+ VDSS++GLGGCPY
Sbjct: 934 GTPGTVVPMLEAVMFFVPKEKLAVHFHDTYGQSLSNILISLQMGVSVVDSSVAGLGGCPY 993
Query: 342 ARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPTESK 196
A+GASGN+ATED+VY L GLG++T+VDL K++ AG +I N LG+ + SK
Sbjct: 994 AKGASGNVATEDVVYMLNGLGISTNVDLGKVMAAGEFICNHLGRQSGSK 1042
>11_02_0028 +
7517196-7517206,7517256-7517312,7517423-7517503,
7518009-7518108,7518454-7518507,7519045-7519115,
7519248-7519455,7519647-7519700,7519934-7520025,
7520090-7520285,7521158-7521339,7521429-7521496,
7522848-7522920,7523010-7523071,7523155-7524079,
7524843-7525133,7525601-7525871
Length = 931
Score = 31.1 bits (67), Expect = 0.58
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -1
Query: 534 MNSAGRSGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGLG 355
MN + G LLH L+ P+Q+++ +D Y +N + F I + +
Sbjct: 227 MNDREKDGVHGILLHHRLS---PKQISICLNDMYESRTANGQPPVTFAIAAQEKEDIHIS 283
Query: 354 GCPY--ARGASGNLATEDLVYFLYGLGVNTDVDLVK 253
CPY G+S + +D+ ++ G ++DL K
Sbjct: 284 ECPYFIISGSSDAFSAKDMWNYVKENGSFDNLDLTK 319
>03_03_0041 - 14007687-14009381
Length = 564
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 230 MYRPASIIFTRSTSVLTPRPYRK*TRSSVARLPLAPRAYGHPPSPEMEESTVLIP 394
++ PA + T S + +P P + R + LP AP A P E E L+P
Sbjct: 64 LFHPACVRLTLSHLLPSPDPSLRFLRFLSSHLPAAPDAAPAEPEHEHEHEPPLLP 118
>05_05_0366 +
24442227-24442472,24442549-24442734,24442818-24442983,
24443109-24443560
Length = 349
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 513 GSVRRLLHEILTVAKPEQLALHFHDTYGQG 424
G +R +L E T+A P L +H+HD + QG
Sbjct: 55 GEMRMILEEDPTLA-PSLLRMHYHDCFVQG 83
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +2
Query: 335 PRAYGHP-----PSPEMEESTVLIPNSRPASKLESPCP 433
PRA G P P P+ E+S + +S P SK E P P
Sbjct: 39 PRAKGKPKPKPKPEPKAEDSKLKADDSIPMSKPEEPKP 76
>07_03_1603 +
28080561-28080706,28080752-28080834,28082055-28082092,
28083639-28084051,28084390-28084458,28084868-28084871,
28086638-28086763
Length = 292
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 305 RSSVARLPLAPRAYGHPPSPEMEESTVLIPNSRPASKLE 421
R+S+A +PL+PR+ P +PE ++ V +PN E
Sbjct: 28 RASLAWVPLSPRSIPQPLAPERFQN-VRLPNDNDMQTAE 65
>05_04_0176 +
18749945-18749969,18750186-18750751,18750876-18750944,
18752128-18752325,18752791-18752922,18753658-18753744,
18753845-18754288,18754644-18754811,18755129-18755359,
18755893-18756008,18756125-18756407
Length = 772
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 516 SGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGL 358
S S +L+H + TV+KP Q A + QG+ L+ +E ++T+ I L
Sbjct: 717 SRSANQLVHFVETVSKPYQDACQQKIDWLQGVQGELSTVERKLQTLKVEIQNL 769
>04_04_1225 -
31865556-31865590,31865687-31865734,31866179-31866262,
31866336-31866395,31866589-31866642,31866747-31867710
Length = 414
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 200 DSVGFPRKLEMYRPASIIFTRSTSVLTPRPY 292
+ V F + L+M RP FT+ T PRP+
Sbjct: 213 EDVTFAKPLQMRRPVEKSFTKHTVPSVPRPH 243
>01_06_0073 +
26191822-26192116,26192227-26192445,26193655-26193803,
26193910-26194186,26194683-26194963
Length = 406
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -1
Query: 459 LALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGLGGCPYARGASG 325
+A+ + D YG + L+ +FGIK ++ G GG PY G SG
Sbjct: 292 VAIIYADYYGAAMEVFLSPEQFGIKDPLTACCG-GGGPY--GVSG 333
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 27.1 bits (57), Expect = 9.5
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +2
Query: 200 DSVGFPRKLEMYRPASIIFTRSTSVLTPRPYRK*TRSSVARLPLAPRAYGHPPSPEMEES 379
+SV L++ +PASI +S TP P + +SS LP P PP E+
Sbjct: 818 ESVPSSEALDVEKPASITQAEPSSPNTPPPGFENFKSSWLPLPTTP-----PP----VET 868
Query: 380 TVLIPNSRPASKLESPCPYVS 442
T ++P+ +E+P VS
Sbjct: 869 TDVLPDVVVTKAVEAPIEEVS 889
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,409
Number of Sequences: 37544
Number of extensions: 300226
Number of successful extensions: 874
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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