Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N17
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   1.9  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   5.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.6  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 498 SLCSAKKAAQKPDWAKKDIRDFSDAD 421
           +L +A+KA    DW  K + +F DAD
Sbjct: 544 ALAAARKALSFQDWLDKKMLEFEDAD 569


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = -2

Query: 462 DWAKKDIRDFSDADMERLLDQWXXXXXXXXXXXXXEHLRKPPALD-LTKMDMSNPEAVLQ 286
           +W   D  D + A M+RLLD               + L    AL+ +TK+  SN   V  
Sbjct: 112 NWLIADRND-TQAIMKRLLDSLKKAKNPIASGIRGQELTPQNALNRITKLK-SNGLLV-- 167

Query: 285 ATKKGQTLMMFVSVANKPSRA----RTEEITKIWQTSLWSNHI 169
             K G   +  ++   +P +     ++ E+ +++QTSLW N++
Sbjct: 168 --KPGMDQLSLINGLEEPPKELQSHQSVELYRLYQTSLWKNNL 208


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 255 FVSVANKPSRARTEEITKIWQTSLWSNHIQA 163
           ++S+  KP+ A  E I  +WQ  L++   +A
Sbjct: 417 YISIVQKPNIAFPEIILFLWQAILYNKRFRA 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,787
Number of Sequences: 5004
Number of extensions: 42999
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)