Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N10
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...   105   5e-24
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    30   0.37 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    29   0.86 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   1.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.6  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    26   6.0  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score =  105 bits (253), Expect = 5e-24
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
 Frame = -1

Query: 558 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 379
           F RYVE GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63

Query: 378 KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNR 202
           K    A + +V K W    +  KW  S WA+KL  K+ R+Q+ D+DRF  +   + +R +
Sbjct: 64  KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123

Query: 201 ARTAVFKSLK 172
              AV K+LK
Sbjct: 124 VNVAVAKALK 133


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 552 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 466
           + ++PG+VAL+  G   GK V ++  IDQ
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQ 31


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 552 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 466
           + ++PG+VALV  G   GK V ++  +DQ
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQ 31


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 244 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 342
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = -1

Query: 357 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 178
           + L  +A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A  K 
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQ 760

Query: 177 LKVKAARA 154
           +  ++A A
Sbjct: 761 MSRESAHA 768


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 540 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 415
           PG V ++  G  +GK V V+  ++ T  +V GP   +GVP +++
Sbjct: 54  PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,924
Number of Sequences: 5004
Number of extensions: 54714
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)