Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N09
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   1.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   3.5  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   8.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   8.2  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    24   8.2  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 43  QSMQSSNPVKAVTSIKGSQNAIGMLKYYNINKLCIKFIE 159
           QS +S +PV A+      QN + +L+   +   CI FIE
Sbjct: 734 QSKKSESPVWALNPDDFDQNRLTLLRVPTLIVSCINFIE 772


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 250 SNKVNNVILLHNISCFLLADCFNLFILG 333
           S+ VN+V  LHN   + L  CF+ F+ G
Sbjct: 798 SDLVNSVSYLHNSMEWFLQRCFSRFMNG 825


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 171 QLSVFNKLNAQFINIIVFKHXYCILRAFDAC 79
           Q  +FNK N +FIN +  +  Y       AC
Sbjct: 401 QKEIFNKNNKEFINPLNIRFAYSFNDINQAC 431


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 88  KGSQNAIGMLKYYNINKLCIKFIEDTQLTKTTTC 189
           K S+NA+ + +      L   F+EDT   K+  C
Sbjct: 65  KASENALTLFQQLRFYLLNYLFLEDTSEYKSVLC 98


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 1   VLQHQQYKIVFXKSQSMQSSNPVKAVTSIKGSQN 102
           +LQH+  + +  KS S  +S P+K +++ K + N
Sbjct: 267 LLQHKTPRRIRPKSLSKSNSTPLKHLSAQKPNSN 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,048
Number of Sequences: 5004
Number of extensions: 17878
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)