Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N09
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U80028-5|AAG23983.1|  378|Caenorhabditis elegans Serpentine rece...    27   3.9  
AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical ...    26   6.9  
U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U39999-2|AAK93856.1|  296|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical
           protein F29B9.8 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 25/91 (27%), Positives = 40/91 (43%)
 Frame = +1

Query: 58  SNPVKAVTSIKGSQNAIGMLKYYNINKLCIKFIEDTQLTKTTTCYIASLFK*RPLIFRTF 237
           S P +  T +  S+   G+L     N+     I D  ++ TTT     L   +P  FR  
Sbjct: 11  SMPEEVQTLLTNSEMDPGLLS----NETATTMITDV-ISTTTTTLAPVLIGYQPNPFRIG 65

Query: 238 IIQISNKVNNVILLHNISCFLLADCFNLFIL 330
           ++    K   +IL+  +SC +  D F  F+L
Sbjct: 66  LLAF--KCLLIILIFTLSCTIRKDFFKFFVL 94


>Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical
           protein DY3.3 protein.
          Length = 207

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 88  KGSQNAIGMLKYYNINKLCIKFIEDTQLTKTTTCYIASLFK*RPLIFRTF-IIQISNKVN 264
           K  QN +  +K  N+NK+C  +I +    K          K   L  + + I++I    +
Sbjct: 131 KCQQNFLFFIKLRNLNKICFGYIIERSFRKIVLQVANRDMKNSLLYLKLYHILKICTFCS 190

Query: 265 NVILLHNISCFLL 303
            +I+L ++S + L
Sbjct: 191 CIIILQHLSNYCL 203


>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +1

Query: 190 YIASLFK*RPLIFRTFIIQ---ISNKVNNVILLHNI---SCFLLADCFNLFILGGPLIGF 351
           Y+ S +   PL+   FI+    +S  + N  +L  +     FL  D F+  +LGG ++  
Sbjct: 412 YLLSPYIFSPLVMAPFILNPYVLSPNIFNPYVLSPLVLSPLFLCPDVFSPMVLGGVILSP 471

Query: 352 NSF 360
           NSF
Sbjct: 472 NSF 474


>U80028-5|AAG23983.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein129 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 1   VLQHQQYKIV-FXKSQSMQSSNPVKAVTSIKGSQNAIGMLKYYNINKLCIKFIE--DTQL 171
           VL +  + ++ F K   ++     + V +I G Q  + + K+Y  NKL I+ +E  +  +
Sbjct: 167 VLFNMPFTVIGFLKYDIVEMGFWYECVRAINGRQYVMVISKFYRHNKLLIELLETLNALI 226

Query: 172 TKTTTCYI 195
           +K + C +
Sbjct: 227 SKISPCLL 234


>AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical
           protein C54F6.8 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 33  RKITINAIFQSCQSSHKHQ 89
           +K+  NA+FQ CQ ++KH+
Sbjct: 283 QKLYTNALFQYCQLTYKHR 301


>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
 Frame = +1

Query: 82  SIKGSQNAIGMLKYYNINKLCIKFIEDTQLTKTTT--------CYIASLFK*RPLIFRTF 237
           SI G  +    L   ++   C+KFI+   L K +T        C++ SL     ++    
Sbjct: 79  SIAGLVHLAVNLFNISVQLSCVKFIDKRALFKKSTFFKILLIQCFVVSLRVFLHILTICI 138

Query: 238 IIQISNKVNNVILLHNISCFLLAD-CFNLFIL 330
           II +SN  ++V    +  C L  D C N F L
Sbjct: 139 IIYVSNTESSVSKFLS-QCSLYVDYCSNFFSL 169


>U39999-2|AAK93856.1|  296|Caenorhabditis elegans Hypothetical
           protein F41G3.6 protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 198 RYIACCSFSQLSVFNKLNAQFINIIVF 118
           RY++ CS  QLS+  + N  F  + VF
Sbjct: 136 RYLSQCSLDQLSIDERANVLFAILRVF 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,622,788
Number of Sequences: 27780
Number of extensions: 100227
Number of successful extensions: 240
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)