Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N09
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    20   7.7  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    20   7.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    20   7.7  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    20   7.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    20   7.7  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 82  SIKGSQNAIGMLKYYNIN 135
           +I  + N    L+YYNIN
Sbjct: 89  TIHNNNNNYKKLQYYNIN 106


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 82  SIKGSQNAIGMLKYYNIN 135
           +I  + N    L+YYNIN
Sbjct: 89  TIHNNNNNYKKLQYYNIN 106


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 82  SIKGSQNAIGMLKYYNIN 135
           +I  + N    L+YYNIN
Sbjct: 89  TIHNNNNNYKKLQYYNIN 106


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 82  SIKGSQNAIGMLKYYNIN 135
           +I  + N    L+YYNIN
Sbjct: 89  TIHNNNNNYKKLQYYNIN 106


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 90  FDACDC 73
           FDACDC
Sbjct: 752 FDACDC 757


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 82  SIKGSQNAIGMLKYYNIN 135
           +I  + N    L+YYNIN
Sbjct: 322 TIHNNNNNYKKLQYYNIN 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,081
Number of Sequences: 438
Number of extensions: 1385
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)