Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N05
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    27   2.4  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.9  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   9.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   9.9  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 574 THALIEIAFCSLLSRNKSCMFELLRRKM 491
           THA +++A C+ +  N+SC +++ RR +
Sbjct: 191 THATLDLADCTFMVDNESC-YDICRRNL 217


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 201 IQILNRYSVIKLVFKVSDFILPKLRNT*CSI 109
           I  L RY    L  ++ D ILPKL N  CS+
Sbjct: 107 INSLYRYQDAILKSELKDSILPKLVNCACSV 137


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 YLRYPTLYFLS*GIPSVQLFNFYCF 90
           YL+Y   +F + G     LF F+CF
Sbjct: 94  YLKYKDAFFKNYGAVEWTLFGFWCF 118


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 594 FHLQCHELTLFSHKFKTFEFYCT 662
           F    H+LT  +  FK  E YCT
Sbjct: 858 FATHAHQLTNLTKSFKNVECYCT 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,517
Number of Sequences: 5004
Number of extensions: 68171
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)