Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N03
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    54   2e-08
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    53   6e-08
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   1.0  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   2.4  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    26   5.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.4  

>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 27/70 (38%), Positives = 42/70 (60%)
 Frame = -3

Query: 807 LPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDVIDAMKDIEFDRFV 628
           LP    + KEA   +  +A++FV ++TSA+  I  N  RK L  QDV++A+ +IE+  F 
Sbjct: 30  LPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMPQDVLNALDEIEYPEFS 89

Query: 627 EPLGEALEHY 598
           + L + LE Y
Sbjct: 90  KTLKKHLEAY 99


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 26/71 (36%), Positives = 40/71 (56%)
 Frame = -3

Query: 810 ALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDVIDAMKDIEFDRF 631
           ALP    ISKEA+  +    S F+ +VT  A+     +KRK +TG+DV+ A+  + F+ +
Sbjct: 24  ALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALNTLGFENY 83

Query: 630 VEPLGEALEHY 598
            E L  +L  Y
Sbjct: 84  AEVLKISLTKY 94


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 242 HNSFWDAFEVYLFLIKVYLILK 307
           HNSF++++ +Y FL K+ L+ K
Sbjct: 377 HNSFFESYFIYFFLAKLILLKK 398


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 305 KHFIHYYQLINYCEVTVVNVHGKLVSFKHLSLL*HRHGFFELISYSFSAQFLN 463
           +  +  Y + + C +T       LVS++++     RHG   L  ++ +AQ LN
Sbjct: 374 EELVALYNVSDVCLITSTRDGMNLVSYEYICTQQERHGALILSEFAGAAQSLN 426


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 732 VTSAATNIVKNKKRKALTGQDVIDAMKDIEFDRFVEPLGEALEH 601
           V +AAT ++  K   ++T QD+  ++++  F   VE    A+ H
Sbjct: 219 VEAAATELLDPKNPSSVTKQDLCYSLQETGFAMLVEITERAMAH 262


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 254 WDAFEVYLFLIKVYLILKHFIHYYQLIN 337
           W    +  F I +++I K+F  YY+L N
Sbjct: 189 WTCLSIENFGISIHVITKNFREYYKLDN 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,974
Number of Sequences: 5004
Number of extensions: 49780
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)