Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N03
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    45   7e-05
AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical ...    31   1.3  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    28   7.0  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    28   7.0  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    28   7.0  
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        28   7.0  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    28   7.0  

>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = -3

Query: 789 ISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDVIDAMKDIEFDRFVEPLGEA 610
           ++K+A+    +  S F+ ++ S A  I    KRK +T  D++ AM+   FD + EP+   
Sbjct: 85  LAKDAKECAQECVSEFISFIASEAAEICNITKRKTITADDLLTAMEATGFDNYAEPMRIF 144

Query: 609 LEHY 598
           L+ Y
Sbjct: 145 LQKY 148


>AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical
           protein Y53F4B.3 protein.
          Length = 179

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -3

Query: 804 PSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDVIDAMKDIEFDRFVE 625
           P    ++ EA   +AKAA +F+  +++AA      +KRK +  +D+  A+K      F+E
Sbjct: 49  PDVEMLNNEALQLMAKAAELFIKELSNAANQNAALEKRKTVQTKDIDKAIKKTWAFAFLE 108


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 88  CEVMDGWM*XKCDNDDESLATQPCK 14
           C    GW   KC+ D+ S A +PC+
Sbjct: 242 CVCKSGWTGPKCEQDNGSCAAKPCR 266


>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
            protein 2, isoform a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 5    YYSFTRLCCQTLVIIVTFXSHPSIHHLTLSHF 100
            Y+  T +CC TL++++ + ++P  +   L  F
Sbjct: 1065 YFIMTMICCNTLILMMKYYNNPLFYEEILRLF 1096


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 5    YYSFTRLCCQTLVIIVTFXSHPSIHHLTLSHF 100
            Y+  T +CC TL++++ + ++P  +   L  F
Sbjct: 1065 YFIMTMICCNTLILMMKYYNNPLFYEEILRLF 1096


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 5    YYSFTRLCCQTLVIIVTFXSHPSIHHLTLSHF 100
            Y+  T +CC TL++++ + ++P  +   L  F
Sbjct: 1184 YFIMTMICCNTLILMMKYYNNPLFYEEILRLF 1215


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 5   YYSFTRLCCQTLVIIVTFXSHPSIHHLTLSHF 100
           Y+  T +CC TL++++ + ++P  +   L  F
Sbjct: 671 YFIMTMICCNTLILMMKYYNNPLFYEEILRLF 702


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 5    YYSFTRLCCQTLVIIVTFXSHPSIHHLTLSHF 100
            Y+  T +CC TL++++ + ++P  +   L  F
Sbjct: 1184 YFIMTMICCNTLILMMKYYNNPLFYEEILRLF 1215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,441
Number of Sequences: 27780
Number of extensions: 273830
Number of successful extensions: 732
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)